Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0287.Seq
         (825 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.6  
SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)               29   3.5  
SB_10900| Best HMM Match : I-set (HMM E-Value=0)                       28   8.0  

>SB_764| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 445

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 16/35 (45%), Positives = 19/35 (54%)
 Frame = +1

Query: 583 TSYPLGHDDFHLSKLSSAXLVWCRYSEE*LIATGQ 687
           T    GH   H +KLSS  LV CR S+E L+   Q
Sbjct: 367 TDKSAGHIVQHCTKLSSLYLVHCRISDEGLVRCDQ 401


>SB_51372| Best HMM Match : Pyr_redox (HMM E-Value=3e-12)
          Length = 872

 Score = 29.5 bits (63), Expect = 3.5
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +3

Query: 291 LRSQV*LQRLPHPSNRNALLLHGRNRQ 371
           LR Q  +QR P P+ RN++ LHG   Q
Sbjct: 24  LRQQNQVQRRPEPTPRNSIFLHGLRAQ 50


>SB_10900| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1642

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 21/81 (25%), Positives = 33/81 (40%)
 Frame = -1

Query: 306 IPETLELISQGGWRIYVEMSMGSSNHLTSSGLVQKKN*VLKAQWTFRDFDFYVPLQTNST 127
           I +    ++  G  I    + G +  LT +      + V KA  T  D   +V L ++ T
Sbjct: 518 IGQARHTVAANGTLIITMATAGDTGWLTCTATNAAGSTVKKAYLTISDVPVFVQLPSHQT 577

Query: 126 LIFRFFYGLVLRVTGVNIPVI 64
           L+      L  R T  + PVI
Sbjct: 578 LVKGNAITLPCRATAADAPVI 598


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,866,874
Number of Sequences: 59808
Number of extensions: 516254
Number of successful extensions: 938
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2311562737
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)