Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0285.Seq
         (982 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    28   0.096
AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.       23   3.6  
EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    22   6.3  
AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory recept...    22   8.4  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10
           protein.
          Length = 2700

 Score = 28.3 bits (60), Expect = 0.096
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 292 RNNFSIRYWSWNYRGCWHQTC 354
           R+NF   +  WNY  CW   C
Sbjct: 746 RHNFKGLHLDWNYPVCWQSNC 766



 Score = 23.4 bits (48), Expect = 2.7
 Identities = 8/25 (32%), Positives = 9/25 (36%)
 Frame = +1

Query: 280  ELFNRNNFSIRYWSWNYRGCWHQTC 354
            +    NNF      W Y  CW   C
Sbjct: 1930 DFIETNNFDGLDLDWEYPKCWQVDC 1954


>AY453651-1|AAR89057.1|  199|Tribolium castaneum serrate protein.
          Length = 199

 Score = 23.0 bits (47), Expect = 3.6
 Identities = 13/47 (27%), Positives = 20/47 (42%)
 Frame = +1

Query: 214 APQTCQYHRGCVHRSXAHKCNYELFNRNNFSIRYWSWNYRGCWHQTC 354
           +P  C+ +  CV R    +CN     +N +  +  S     C H TC
Sbjct: 111 SPNPCRNNGSCVDRIADFECNC----KNGWKGKTCSLKDSHCDHTTC 153


>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 22.2 bits (45), Expect = 6.3
 Identities = 8/21 (38%), Positives = 10/21 (47%)
 Frame = -3

Query: 965 IXTKILPLXICHSPFXGANFW 903
           + T +L   IC  PF    FW
Sbjct: 294 LGTVVLAFFICLLPFRALTFW 314


>AM292354-1|CAL23166.1|  321|Tribolium castaneum gustatory receptor
           candidate 33 protein.
          Length = 321

 Score = 21.8 bits (44), Expect = 8.4
 Identities = 5/16 (31%), Positives = 9/16 (56%)
 Frame = +1

Query: 301 FSIRYWSWNYRGCWHQ 348
           +++ YW   Y   WH+
Sbjct: 117 YAVYYWRQQYEDFWHR 132


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,954
Number of Sequences: 336
Number of extensions: 4834
Number of successful extensions: 12
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 27823477
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)