Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0285.Seq
         (982 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    26   7.1  
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   9.3  
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   9.3  
SPAC9G1.10c |||inositol polyphosphate phosphatase |Schizosacchar...    26   9.3  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 26.2 bits (55), Expect = 7.1
 Identities = 16/34 (47%), Positives = 22/34 (64%)
 Frame = +1

Query: 391 LIPITRPRKSPVSLFFVTTSPCREWVICAPAAFL 492
           +IPI +  KS +SL F+T SPC  + IC+  A L
Sbjct: 45  IIPIAQ--KSNISLPFLTLSPC-SFTICSLRARL 75


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = -3

Query: 974 FTGIXTKILPLXICHSPFXGANFWKGPSXRAFFV 873
           F  I + +  L + HS F  +   +GPS   FFV
Sbjct: 569 FEAIHSPVSTLPLFHSNFSVSKIARGPSIEQFFV 602


>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 646

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = +2

Query: 8   YQAYXYXXPRDHILLFHARNIQAAFLARF 94
           Y AY +   RDH  L    ++QA FL+RF
Sbjct: 363 YSAYLHII-RDHYNLSDLADVQAIFLSRF 390


>SPAC9G1.10c |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1191

 Score = 25.8 bits (54), Expect = 9.3
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = +3

Query: 201 SPTICSANVSVSPRMRAPQ 257
           SPTI ++ VSVSP ++ PQ
Sbjct: 126 SPTISNSFVSVSPLLKRPQ 144


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,832,764
Number of Sequences: 5004
Number of extensions: 78234
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 505288058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)