Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0285.Seq
         (982 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ chann...    24   6.0  
AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium ch...    24   6.0  
AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcript...    24   6.0  

>AJ441131-5|CAD29634.1|  574|Anopheles gambiae putative Na+ channel
           protein.
          Length = 574

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 220 QTCQYHRGCVHRSXAHKCNYELFNRNN 300
           +  Q  R CV  S A+   Y +++RNN
Sbjct: 339 KVAQAQRQCVFASEANLSYYSVYSRNN 365


>AJ439398-4|CAD28127.1|  572|Anopheles gambiae putative sodium
           channel protein.
          Length = 572

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 220 QTCQYHRGCVHRSXAHKCNYELFNRNN 300
           +  Q  R CV  S A+   Y +++RNN
Sbjct: 339 KVAQAQRQCVFASEANLSYYSVYSRNN 365


>AB090821-2|BAC57918.1| 1168|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1168

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = -1

Query: 541  IRVRFRKREPENGYHIQGRQQARKLPT 461
            ++ R R+R+ E G   QGRQ+  ++PT
Sbjct: 1135 LQYRRRRRDGELGDVPQGRQRRGRIPT 1161


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 997,080
Number of Sequences: 2352
Number of extensions: 21724
Number of successful extensions: 71
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 563,979
effective HSP length: 65
effective length of database: 411,099
effective search space used: 107296839
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)