Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0285.Seq
         (982 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related...    29   6.7  
AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related...    29   6.7  

>AF480439-1|AAM76083.1| 1037|Caenorhabditis elegans dicer-related
           helicase protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
 Frame = +3

Query: 570 SQKLPSK-VDKGRHLKDASPVLDHAICK----SYPDSSKLTTFXREGLRSIGFDSKGGPV 734
           S  +P++ V + + L  A+P +   +C     S  D S+L  F       I FD     V
Sbjct: 377 SDNVPTRNVIQSKDLIVATPQMIVNLCNEHRNSLDDESRLDQFFLSTFTIIFFDECHNTV 436

Query: 735 XNSPYSESYSIHWAGRFYNVVTGKNLGVXPT*SALQQ-IPLXAXWGNNEK 881
            NSPYS         R Y+ +  KN+G  P   +L Q I L A  G  +K
Sbjct: 437 KNSPYSNIM------REYHYL--KNMGNMPEGHSLPQIIGLTASLGTGDK 478


>AF036696-4|AAB88350.1| 1037|Caenorhabditis elegans Dicer related
           helicase protein 1 protein.
          Length = 1037

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 34/110 (30%), Positives = 48/110 (43%), Gaps = 6/110 (5%)
 Frame = +3

Query: 570 SQKLPSK-VDKGRHLKDASPVLDHAICK----SYPDSSKLTTFXREGLRSIGFDSKGGPV 734
           S  +P++ V + + L  A+P +   +C     S  D S+L  F       I FD     V
Sbjct: 377 SDNVPTRNVIQSKDLIVATPQMIVNLCNEHRNSLDDESRLDQFFLSTFTIIFFDECHNTV 436

Query: 735 XNSPYSESYSIHWAGRFYNVVTGKNLGVXPT*SALQQ-IPLXAXWGNNEK 881
            NSPYS         R Y+ +  KN+G  P   +L Q I L A  G  +K
Sbjct: 437 KNSPYSNIM------REYHYL--KNMGNMPEGHSLPQIIGLTASLGTGDK 478


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,559,075
Number of Sequences: 27780
Number of extensions: 462246
Number of successful extensions: 967
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 967
length of database: 12,740,198
effective HSP length: 82
effective length of database: 10,462,238
effective search space used: 2552786072
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)