Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0285.Seq
         (982 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    23   4.2  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    23   4.2  
AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.                23   4.2  
AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49 ...    22   7.4  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   7.4  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             22   7.4  

>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 978 KIYRNFXKNFTVXNLPFPISRGQFLER 898
           K+Y+N+  N     +P P+  G F  R
Sbjct: 115 KLYKNYIINIEQIPVPVPVYYGNFPPR 141


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 978 KIYRNFXKNFTVXNLPFPISRGQFLER 898
           K+Y+N+  N     +P P+  G F  R
Sbjct: 115 KLYKNYIINIEQIPVPVPVYYGNFPPR 141


>AB183889-1|BAD86829.1|  316|Apis mellifera Mos protein.
          Length = 316

 Score = 23.0 bits (47), Expect = 4.2
 Identities = 13/26 (50%), Positives = 13/26 (50%)
 Frame = -3

Query: 776 GPVN*IRLTIGRIGYRAPLRIKTNRP 699
           G  N I    G  GY AP  IK NRP
Sbjct: 206 GAPNEIDKFYGTPGYTAPEVIKQNRP 231


>AF441189-1|AAL73401.1|  134|Apis mellifera ribosomal protein 49
           protein.
          Length = 134

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = +2

Query: 791 RRDWEKPGGXPNLIR 835
           +R+W KP G  N +R
Sbjct: 31  KRNWRKPKGIDNRVR 45


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +3

Query: 6   DIKLXDTVDPEIIFYYSMHEIFKQHF*PA 92
           D K+   +  E I  Y MH+I K+   PA
Sbjct: 249 DHKMLTPIKSEPIDAYEMHQISKKKLSPA 277


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 22.2 bits (45), Expect = 7.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 495  SKEGSRRANYPLPARGGSDEK*RYG 421
            +K  S+ AN P PA GG   + + G
Sbjct: 1014 AKPQSQEANKPKPATGGKGTRPKRG 1038


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 271,151
Number of Sequences: 438
Number of extensions: 6543
Number of successful extensions: 17
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 32411652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)