Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0274.Seq
         (832 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    22   5.2  
AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain tran...    22   5.2  
AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein p...    22   5.2  
AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein p...    22   5.2  
AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein p...    21   9.1  
AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein p...    21   9.1  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 10/52 (19%), Positives = 19/52 (36%)
 Frame = +3

Query: 402  IHWPSFYNVVNWENPGVTQLNRLAAXPPFASWRNSEXPAPIALPNSCAPEWR 557
            +HW     + +W      +  +    P  +SW+    P+    P S    W+
Sbjct: 1135 LHWNKERKICDWPKSAKCEEKKPGHKPSTSSWQKPTKPS--YRPPSTTNHWQ 1184


>AY043293-2|AAK96034.1|  353|Tribolium castaneum homeodomain
           transcription factor Labialprotein.
          Length = 353

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 321 SFAPSSSSILNND*YNVNNRITN 253
           S +PSS++++ N+  N N+R +N
Sbjct: 331 SNSPSSTNLIQNEASNENSRESN 353


>AF231104-1|AAF64149.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 321 SFAPSSSSILNND*YNVNNRITN 253
           S +PSS++++ N+  N N+R +N
Sbjct: 120 SNSPSSTNLIQNEASNENSRESN 142


>AF231103-1|AAF64148.1|  142|Tribolium castaneum labial protein
           protein.
          Length = 142

 Score = 22.2 bits (45), Expect = 5.2
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -2

Query: 321 SFAPSSSSILNND*YNVNNRITN 253
           S +PSS++++ N+  N N+R +N
Sbjct: 120 SNSPSSTNLIQNEASNENSRESN 142


>AJ005422-1|CAA06528.1|  287|Tribolium castaneum caudal protein
           protein.
          Length = 287

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 737 PRFFNSGLLFQTGTTLNP 684
           P F +SG++   GT L P
Sbjct: 70  PEFVHSGMVHNDGTQLMP 87


>AJ005421-1|CAA06527.1|  249|Tribolium castaneum caudal protein
           protein.
          Length = 249

 Score = 21.4 bits (43), Expect = 9.1
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -3

Query: 737 PRFFNSGLLFQTGTTLNP 684
           P F +SG++   GT L P
Sbjct: 70  PEFVHSGMVHNDGTQLMP 87


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,086
Number of Sequences: 336
Number of extensions: 3322
Number of successful extensions: 7
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 22829180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)