Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0274.Seq
         (832 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    31   0.20 
SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomy...    26   7.5  
SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr 1|||M...    25   10.0 

>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 31.1 bits (67), Expect = 0.20
 Identities = 16/37 (43%), Positives = 19/37 (51%)
 Frame = +2

Query: 719 HY*RNVDSNVKGXKTSIQGDGPTNVNPSP*SSFLGVP 829
           HY  N  SN +  KTSI G+   N NP     +L VP
Sbjct: 64  HYVDNHSSNEEASKTSIDGESLVNENPCKLPFYLTVP 100


>SPAC15A10.11 |ubr11||N-end-recognizing protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2052

 Score = 25.8 bits (54), Expect = 7.5
 Identities = 12/24 (50%), Positives = 14/24 (58%)
 Frame = +2

Query: 608 VKSAHFLTNRPKSAKSLINQKNRP 679
           VK   FLTN   +  SL+ Q NRP
Sbjct: 675 VKDYDFLTNLNATTLSLLTQSNRP 698


>SPAC20G8.02 |||phospholipase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 757

 Score = 25.4 bits (53), Expect = 10.0
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +2

Query: 83  PKTTITNRVSLARLSDGSKNVLLLFQNFHNHVEP 184
           PKT +T  +S +  S  S   +L  QNF+N   P
Sbjct: 577 PKTNLTRSLSYSEQSFDSGVSILSCQNFYNIFHP 610


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,927,852
Number of Sequences: 5004
Number of extensions: 53922
Number of successful extensions: 91
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 408446760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)