Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0274.Seq
         (832 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_0707 - 20212190-20214592                                         29   3.4  
02_01_0385 + 2783387-2783695,2784149-2785082,2785206-2785309,278...    29   4.5  

>08_02_0707 - 20212190-20214592
          Length = 800

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
 Frame = +1

Query: 448 ALPNLIALQXIPLS---PAGVIARXPHRSPFPTVAHLNGEWQIVSVNILLKFA 597
           +LP L+AL    +S   P    A   H  PFP V HL     +++V +LL+FA
Sbjct: 75  SLPPLLALLSAAVSLLLPPFSAAAAAHH-PFPAVTHLLRPAALLAVTLLLRFA 126


>02_01_0385 +
           2783387-2783695,2784149-2785082,2785206-2785309,
           2785402-2785486,2785517-2787578,2787732-2787753,
           2788157-2788327,2791473-2791517,2792558-2793874,
           2793962-2794012,2794090-2794188,2794352-2794504,
           2794554-2794571
          Length = 1789

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = -3

Query: 242 KIHIHEXLYAHAKHNARAREVRRDYENF 159
           K+H+H+ ++  A+H A  R  +RD  NF
Sbjct: 462 KLHMHDMVHELARHVAENRNTKRDNLNF 489


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,710,949
Number of Sequences: 37544
Number of extensions: 342270
Number of successful extensions: 694
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 686
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 694
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2291695380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)