Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0274.Seq
         (832 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M97933-1|AAA28566.1|  569|Drosophila melanogaster germ cell-less...    30   4.5  
AY061319-1|AAL28867.1|  569|Drosophila melanogaster LD23660p pro...    30   4.5  
AE013599-707|AAF59048.1|  569|Drosophila melanogaster CG8411-PA ...    30   4.5  

>M97933-1|AAA28566.1|  569|Drosophila melanogaster germ cell-less
           protein protein.
          Length = 569

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = -1

Query: 736 HVSLIVDSCSKLEQHSTLSRSILLIYKGFCRFRPIG*KMS*FNKNLTRILTKY*RLQFAI 557
           H+  I+D C+++   +    + +  Y+  C++  +G K S F      +L+ Y +    +
Sbjct: 150 HLDGIIDKCAEVMVDNISPETAIQYYEAACQYGVVGVKKSTFQWFQINLLSIYSKQPNLL 209

Query: 556 RHSGAQLL 533
           RH   +L+
Sbjct: 210 RHISIELM 217


>AY061319-1|AAL28867.1|  569|Drosophila melanogaster LD23660p
           protein.
          Length = 569

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = -1

Query: 736 HVSLIVDSCSKLEQHSTLSRSILLIYKGFCRFRPIG*KMS*FNKNLTRILTKY*RLQFAI 557
           H+  I+D C+++   +    + +  Y+  C++  +G K S F      +L+ Y +    +
Sbjct: 150 HLDGIIDKCAEVMVDNISPETAIQYYEAACQYGVVGVKKSTFQWFQINLLSIYSKQPNLL 209

Query: 556 RHSGAQLL 533
           RH   +L+
Sbjct: 210 RHISIELM 217


>AE013599-707|AAF59048.1|  569|Drosophila melanogaster CG8411-PA
           protein.
          Length = 569

 Score = 29.9 bits (64), Expect = 4.5
 Identities = 15/68 (22%), Positives = 33/68 (48%)
 Frame = -1

Query: 736 HVSLIVDSCSKLEQHSTLSRSILLIYKGFCRFRPIG*KMS*FNKNLTRILTKY*RLQFAI 557
           H+  I+D C+++   +    + +  Y+  C++  +G K S F      +L+ Y +    +
Sbjct: 150 HLDGIIDKCAEVMVDNISPETAIQYYEAACQYGVVGVKKSTFQWFQINLLSIYSKQPNLL 209

Query: 556 RHSGAQLL 533
           RH   +L+
Sbjct: 210 RHISIELM 217


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 31,166,207
Number of Sequences: 53049
Number of extensions: 580565
Number of successful extensions: 1442
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1386
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1441
length of database: 24,988,368
effective HSP length: 84
effective length of database: 20,532,252
effective search space used: 3942192384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)