Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0273.Seq
         (922 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredox...    31   0.30 
SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces...    28   2.1  
SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|c...    27   4.9  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    27   4.9  
SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr 1|||M...    26   6.5  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    26   6.5  
SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   6.5  

>SPAC22E12.10c |etp1|cox15|mitochondrial type I [2Fe-2S] ferredoxin
           Etp1/ cytochrome oxidase cofactor Cox15,
           fusion|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 631

 Score = 30.7 bits (66), Expect = 0.30
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 455 CVLTCLARSMGRTSRSLT*ASILNTANSS 369
           C ++CL RS  R SRS + +S+LN  N S
Sbjct: 22  CDISCLGRSSWRMSRSFSGSSVLNEINLS 50


>SPAC23C11.10 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 265

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 12/36 (33%), Positives = 19/36 (52%)
 Frame = +3

Query: 465 VCWRWPGSGTPDIRRLAHCPRYIRVLKTXRAYHFLY 572
           VC+    SG  D   ++  PR ++V K   ++H LY
Sbjct: 4   VCYESSSSGEDDDETISDNPRMLKVPKLQESFHELY 39


>SPBC2D10.04 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 658

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 11/30 (36%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = -3

Query: 527 ARTVSKPPNIRR-PTSWPPPADSSICVLTC 441
           A  +S+P  + R P++ PPP D  +C   C
Sbjct: 565 AAQISRPAQLFRIPSTNPPPFDGDVCPPAC 594


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.6 bits (56), Expect = 4.9
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +3

Query: 198  PVSSYTSPFRDTSSAACRPPVPYLLRVQRLHELAGTPGVPPHTVPYGI 341
            P+ + T P   +SS A   P P       +  +    G PP   P GI
Sbjct: 1044 PIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGI 1091


>SPAC140.02 |gar2||GAR family|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 500

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 16/53 (30%), Positives = 24/53 (45%), Gaps = 1/53 (1%)
 Frame = +1

Query: 4   ETTRVEGIRY-SDTDIAAVPRXXXXXXXXXVDEPARLS**RPRLEGAVRGGRG 159
           ++ R++G  Y + +DI +  +            P RL    PR  G  RGGRG
Sbjct: 402 QSGRLKGFGYVTFSDIDSAKKCVEMNGHFIAGRPCRLDFSTPRTGGGSRGGRG 454


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1076

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 1/66 (1%)
 Frame = -3

Query: 491  PTSWPPPADSSICVLT-CLARSMGRTSRSLT*ASILNTANSSASCIHEVFSNSVRHCVRR 315
            P+S+PP A+S++ V +    + + +   S         A S       V + SV+ CV  
Sbjct: 898  PSSYPPAAESNVSVSSDTSTKDVEKQEPSSAEQPAQGIAESLRRLKEYVKAGSVKECVAE 957

Query: 314  YARSPS 297
            +   PS
Sbjct: 958  WCNMPS 963


>SPBC1604.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 860

 Score = 26.2 bits (55), Expect = 6.5
 Identities = 12/29 (41%), Positives = 15/29 (51%)
 Frame = -3

Query: 209 GRYRTQASSISELRGEWPRPPRTAPSSRG 123
           G   T  + IS L+ +   PP TAP S G
Sbjct: 52  GASNTSTNQISSLKVDVSSPPSTAPGSAG 80


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,123,832
Number of Sequences: 5004
Number of extensions: 57615
Number of successful extensions: 154
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 468512460
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)