Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0273.Seq
         (922 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976     45   7e-05
12_02_0747 - 22743259-22743268,22743686-22743773,22744334-227443...    42   5e-04
12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337     40   0.002
04_03_1000 + 21604164-21605387,21605467-21605817                       31   0.97 
08_02_1143 + 24659105-24659386,24660171-24660272,24661259-246615...    30   2.3  
03_01_0619 + 4556665-4557132                                           30   3.0  
11_06_0184 - 21006659-21009823                                         29   6.9  
10_08_0965 + 21915842-21916906                                         28   9.1  

>11_06_0694 - 26336742-26336957,26337731-26337950,26338777-26338976
          Length = 211

 Score = 45.2 bits (102), Expect = 7e-05
 Identities = 20/47 (42%), Positives = 29/47 (61%)
 Frame = +2

Query: 110 SASNVRGWRALYVGAVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQ 250
           S + V   R  +V   AT  GA +W+T + GIV++  LPRH+FG +Q
Sbjct: 32  SGAGVAAARLAHVLCFATAWGAALWVTFIGGIVMFKYLPRHQFGSLQ 78


>12_02_0747 -
           22743259-22743268,22743686-22743773,22744334-22744395,
           22744728-22744915,22746276-22746495,22746647-22746855
          Length = 258

 Score = 42.3 bits (95), Expect = 5e-04
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +2

Query: 158 ATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQ 250
           AT  GA +W T + GI+++ +LPRH+FG +Q
Sbjct: 51  ATSWGAALWATFIGGIIMFKNLPRHQFGNLQ 81


>12_02_0748 - 22749911-22750135,22752142-22752358,22753177-22753337
          Length = 200

 Score = 40.3 bits (90), Expect = 0.002
 Identities = 14/39 (35%), Positives = 26/39 (66%)
 Frame = +2

Query: 134 RALYVGAVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQ 250
           +A+++   AT  G  +W  LV G++++ +LPRH  GR++
Sbjct: 27  KAVHLLCFATSWGVTVWAILVGGVIMFLNLPRHAMGRLR 65


>04_03_1000 + 21604164-21605387,21605467-21605817
          Length = 524

 Score = 31.5 bits (68), Expect = 0.97
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 158 ATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQ 250
           A   GA +W+T VS  VL  +LPR +   VQ
Sbjct: 318 AAAYGASLWVTFVSSYVLAAALPRQQLAMVQ 348


>08_02_1143 +
           24659105-24659386,24660171-24660272,24661259-24661521,
           24661775-24661874,24662080-24662238,24662327-24663147,
           24663299-24663618,24665831-24667398
          Length = 1204

 Score = 30.3 bits (65), Expect = 2.3
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -3

Query: 539 HADVARTVSKPPNIRRPTSWPPP 471
           HA V  +   PP++R P  WPPP
Sbjct: 702 HAAVELSPPSPPHLRIPRPWPPP 724


>03_01_0619 + 4556665-4557132
          Length = 155

 Score = 29.9 bits (64), Expect = 3.0
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -3

Query: 566 EVVGAXGLQHADVARTVSKPPNIRRPTSWPPPADSSICVLTCLARSMGRTSRS 408
           +VV A G   AD+++ + KPP    P   P PA   I +    +   GR  R+
Sbjct: 71  KVVAARGHFAADLSKPIKKPPPAPAPLPPPSPAQRRILLRRSASDLGGRVRRA 123


>11_06_0184 - 21006659-21009823
          Length = 1054

 Score = 28.7 bits (61), Expect = 6.9
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +3

Query: 111 QLVTSAAGGRCTWGPWPLTSELR 179
           +L T + GG C W PW + +  R
Sbjct: 79  ELYTQSGGGHCGWQPWTMVARHR 101


>10_08_0965 + 21915842-21916906
          Length = 354

 Score = 28.3 bits (60), Expect = 9.1
 Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
 Frame = -3

Query: 260 NRWSARGRTRVSEGRSIGRYRT-QASSISELRGEWPRPPRTAPSSRGR 120
           NRWS+R  +R S GR   RY     ++ +     W      AP++R R
Sbjct: 287 NRWSSRWSSRWSSGRWSSRYDAGTVTAAATAEWWWDMDGGAAPAARRR 334


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,622,156
Number of Sequences: 37544
Number of extensions: 460581
Number of successful extensions: 1429
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1429
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2624101760
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)