Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0273.Seq
         (922 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)             28   9.2  
SB_14661| Best HMM Match : EMI (HMM E-Value=0.8)                       28   9.2  

>SB_52408| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 673

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = +1

Query: 598 GCSLYSTMXHSRFHVPNDPAAGFDNTLXVSYXXSGQ 705
           G  +YST  H     P+DP  GF+ +L +SY  + Q
Sbjct: 216 GGMMYSTPYHPMHSGPHDPRNGFNQSLDMSYGSAHQ 251


>SB_38688| Best HMM Match : TP901-1_ORF40 (HMM E-Value=1.7)
          Length = 576

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
 Frame = +1

Query: 157 GHSPRSSDMDDA--C---VRYRPILLPSETRVRPRADHLFPIYYEFNA 285
           G+ P S +  DA  C   +RY+  L+  + R +P +    P+Y+++N+
Sbjct: 440 GNEPESVNDPDAGYCGVGIRYQLSLMRGDIRFKPDSAKYIPVYFDYNS 487


>SB_14661| Best HMM Match : EMI (HMM E-Value=0.8)
          Length = 143

 Score = 28.3 bits (60), Expect = 9.2
 Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
 Frame = +1

Query: 406 RLRLVRPMLRAKHVKTQMEESAGGG-QEVGRLILGGLL 516
           +LRL   + + KH+ T +E+S G G QE  R  L G L
Sbjct: 9   QLRLEAKICQEKHLLTNLEKSLGPGIQETDRACLKGYL 46


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,860,861
Number of Sequences: 59808
Number of extensions: 501140
Number of successful extensions: 1212
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1085
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1210
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2669453024
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)