Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0273.Seq
         (922 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY060370-1|AAL25409.1|  436|Drosophila melanogaster LD23009p pro...    66   8e-11
AE014298-3083|AAF50857.2|  436|Drosophila melanogaster CG32512-P...    66   8e-11
AF053358-1|AAC35280.1| 1383|Drosophila melanogaster guanine nucl...    29   9.0  

>AY060370-1|AAL25409.1|  436|Drosophila melanogaster LD23009p
           protein.
          Length = 436

 Score = 65.7 bits (153), Expect = 8e-11
 Identities = 36/87 (41%), Positives = 52/87 (59%)
 Frame = +1

Query: 256 LFPIYYEFNAXMSLLGLLAYLRTQCLTEFENTSWIQLALLLAVFSIEAYVRLRLVRPMLR 435
           LFP Y+  NA +SL  L+ Y +   L+ +  ++ IQ+  L     IE  VRL LV PML+
Sbjct: 307 LFPRYFALNAMLSLTMLVVYAK-YFLSGWTTSAGIQMGSLALAAGIEVVVRLYLVPPMLQ 365

Query: 436 AKHVKTQMEESAGGGQEVGRLILGGLL 516
             H K ++E++ G GQEVG L+ G L+
Sbjct: 366 LMHEKYRIEDAIGSGQEVGSLVQGDLV 392



 Score = 61.3 bits (142), Expect = 2e-09
 Identities = 25/37 (67%), Positives = 31/37 (83%)
 Frame = +2

Query: 140 LYVGAVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQ 250
           +++GA ATH G+QIWMT VSG+ LYFSLPRH FG+ Q
Sbjct: 268 VFLGAFATHFGSQIWMTFVSGLSLYFSLPRHVFGQCQ 304


>AE014298-3083|AAF50857.2|  436|Drosophila melanogaster CG32512-PA
           protein.
          Length = 436

 Score = 65.7 bits (153), Expect = 8e-11
 Identities = 36/87 (41%), Positives = 52/87 (59%)
 Frame = +1

Query: 256 LFPIYYEFNAXMSLLGLLAYLRTQCLTEFENTSWIQLALLLAVFSIEAYVRLRLVRPMLR 435
           LFP Y+  NA +SL  L+ Y +   L+ +  ++ IQ+  L     IE  VRL LV PML+
Sbjct: 307 LFPRYFALNAMLSLTMLVVYAK-YFLSGWTTSAGIQMGSLALAAGIEVVVRLYLVPPMLQ 365

Query: 436 AKHVKTQMEESAGGGQEVGRLILGGLL 516
             H K ++E++ G GQEVG L+ G L+
Sbjct: 366 LMHEKYRIEDAIGSGQEVGSLVQGDLV 392



 Score = 61.3 bits (142), Expect = 2e-09
 Identities = 25/37 (67%), Positives = 31/37 (83%)
 Frame = +2

Query: 140 LYVGAVATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQ 250
           +++GA ATH G+QIWMT VSG+ LYFSLPRH FG+ Q
Sbjct: 268 VFLGAFATHFGSQIWMTFVSGLSLYFSLPRHVFGQCQ 304


>AF053358-1|AAC35280.1| 1383|Drosophila melanogaster guanine
           nucleotide exchange factorDC3G protein.
          Length = 1383

 Score = 29.1 bits (62), Expect = 9.0
 Identities = 18/53 (33%), Positives = 23/53 (43%)
 Frame = +3

Query: 153 PWPLTSELRYG*RLCPVSSYTSPFRDTSSAACRPPVPYLLRVQRLHELAGTPG 311
           P   +S +  G   C  SS  S    + S AC PP P      +  +L GTPG
Sbjct: 40  PGTCSSGIGVGGGGCSSSSNNSTNSGSYSTACTPPPPTHQHHSQHQQLQGTPG 92


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,272,347
Number of Sequences: 53049
Number of extensions: 731030
Number of successful extensions: 2270
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2035
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2269
length of database: 24,988,368
effective HSP length: 85
effective length of database: 20,479,203
effective search space used: 4525903863
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)