Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0273.Seq
         (922 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF043698-5|AAL65782.1|  104|Caenorhabditis elegans Saposin-like ...    32   0.66 
AL032618-2|CAA21485.1|  640|Caenorhabditis elegans Hypothetical ...    30   2.0  

>AF043698-5|AAL65782.1|  104|Caenorhabditis elegans Saposin-like
           protein family protein17 protein.
          Length = 104

 Score = 31.9 bits (69), Expect = 0.66
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = -3

Query: 476 PPADSSICVLTCLARSMGRTSRSLT*ASILNTANSSASCIHEVFSNSVRHCVRRYARSPS 297
           PP+ +++  +TC+A   G  ++ L     +   +  A C+ EV ++S  H    Y     
Sbjct: 22  PPSQATLACITCVATVKGVEAKMLHEGGNVAKHDVDAICLKEVPTHSAEHLCEEYGEHEV 81

Query: 296 KLMXAL 279
            +M  L
Sbjct: 82  DVMVTL 87


>AL032618-2|CAA21485.1|  640|Caenorhabditis elegans Hypothetical
           protein Y42A5A.2 protein.
          Length = 640

 Score = 30.3 bits (65), Expect = 2.0
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = +3

Query: 237 SAACRPPVPYLLRVQRLHELAGTPGVPPHT 326
           S  C P  PYLL V+ +H L  + G  PHT
Sbjct: 403 SDVCSPCHPYLLHVRIIHLLEHSSGAWPHT 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,763,330
Number of Sequences: 27780
Number of extensions: 337591
Number of successful extensions: 844
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 802
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 844
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2360254050
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)