Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0273.Seq
         (922 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    23   3.0  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    22   6.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       22   6.8  

>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = -3

Query: 605  EQPSDIMVPMXIEEVVGAXGLQHADVARTVSKPPN 501
            E PSD ++ +  + +     + + DV+  VS P N
Sbjct: 1342 EVPSDALIALYSQGLFSLSEIDNLDVSLDVSNPKN 1376


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 8/14 (57%), Positives = 8/14 (57%)
 Frame = -1

Query: 691 HKKXSMCCRTPPPD 650
           HKK   CC  P PD
Sbjct: 211 HKKYYPCCDEPYPD 224


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 22.2 bits (45), Expect = 6.8
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = +3

Query: 234 SSAACRPPVPYLLRVQRLHELAGTPGVPPHTVP 332
           S+ A  PP+P +  +  +  L   PG  P T+P
Sbjct: 412 SAGAPMPPIPNMSNMSGMPPLPNMPGSMP-TMP 443


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,113
Number of Sequences: 438
Number of extensions: 4336
Number of successful extensions: 9
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29992872
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)