Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0273.Seq
         (922 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g62580.1 68416.m07030 expressed protein                             42   6e-04
At2g44190.1 68415.m05497 expressed protein  contains Pfam profil...    32   0.61 
At1g72100.1 68414.m08334 late embryogenesis abundant domain-cont...    31   1.1  
At1g22600.1 68414.m02822 hypothetical protein                          29   3.3  
At1g64050.1 68414.m07255 expressed protein                             29   5.7  

>At3g62580.1 68416.m07030 expressed protein
          Length = 213

 Score = 41.9 bits (94), Expect = 6e-04
 Identities = 15/31 (48%), Positives = 23/31 (74%)
 Frame = +2

Query: 158 ATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQ 250
           AT  GA +W T + GI+++ +LPRH+FG +Q
Sbjct: 50  ATAWGAALWATFIGGIIMFKNLPRHQFGNLQ 80


>At2g44190.1 68415.m05497 expressed protein  contains Pfam profile:
           PF04484 family of unknown function (DUF566)
          Length = 474

 Score = 31.9 bits (69), Expect = 0.61
 Identities = 23/72 (31%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
 Frame = -3

Query: 536 ADVARTVSKP--PNIRRPTSWPPPADSSICVLTCLARSMGRTSRSLT*ASILNTANSSAS 363
           A + R++  P  P I  P   PPP+     V    +R M   S S +     ++++SSA 
Sbjct: 3   ARIGRSMEHPSTPAINAPAPVPPPSTRRPRVREVSSRFMSPISSSSS-----SSSSSSAG 57

Query: 362 CIHEVFSNSVRH 327
            +H++ SNS RH
Sbjct: 58  DLHQLTSNSPRH 69


>At1g72100.1 68414.m08334 late embryogenesis abundant
           domain-containing protein / LEA domain-containing
           protein low similarity to embryogenic gene [Betula
           pendula] GI:4539485; contains Pfam profile PF02987: Late
           embryogenesis abundant protein
          Length = 480

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 155 VATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQ 250
           +A   G  +W+T VS  VL   L R +FG VQ
Sbjct: 318 IAAAFGTSVWVTFVSSYVLASVLGRQQFGVVQ 349


>At1g22600.1 68414.m02822 hypothetical protein
          Length = 385

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 14/32 (43%), Positives = 18/32 (56%)
 Frame = +2

Query: 155 VATHLGAQIWMTLVSGIVLYFSLPRHEFGRVQ 250
           +A   G  +W+T VSG VL   L   +FG VQ
Sbjct: 201 IAAAYGMCVWVTFVSGYVLASVLGEQQFGVVQ 232


>At1g64050.1 68414.m07255 expressed protein
          Length = 668

 Score = 28.7 bits (61), Expect = 5.7
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = -3

Query: 491 PTSWPPPADSSICVLTCLARSMGRTSRSLT*ASILNTAN-SSASCIH-EVFSNSVRHCV 321
           PT  P  + SS  + TCL+R++G    S++ A++ N+ N    + +  ++ S+S  HC+
Sbjct: 269 PTKRPVQSQSSTELDTCLSRTLGSPPSSIS-ATLPNSENIDKVNALDGDLSSSSKDHCI 326


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,905,337
Number of Sequences: 28952
Number of extensions: 322780
Number of successful extensions: 859
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 821
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2188225800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)