Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0272.Seq
(904 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P77746 Cluster: Uncharacterized HTH-type transcriptiona... 173 4e-42
UniRef50_P77216 Cluster: Uncharacterized protein ybdN; n=63; Bac... 78 3e-13
UniRef50_A6T677 Cluster: Putative transcriptional regulator; n=1... 46 0.001
UniRef50_Q3ZUZ6 Cluster: Putative uncharacterized protein; n=2; ... 44 0.005
UniRef50_P30979 Cluster: Uncharacterized HTH-type transcriptiona... 39 0.20
UniRef50_Q486J0 Cluster: Transcriptional regulator, LysR family;... 38 0.46
UniRef50_Q8GA37 Cluster: Z1203 protein; n=19; Bacteria|Rep: Z120... 37 0.61
UniRef50_Q15UP0 Cluster: Transcriptional regulator, LysR family;... 37 0.61
UniRef50_A6P8I1 Cluster: Transcriptional regulator, LysR family;... 36 1.9
UniRef50_A6CYW8 Cluster: Transcriptional regulator; n=5; Vibrio|... 36 1.9
UniRef50_Q7R6B3 Cluster: GLP_574_73762_71381; n=1; Giardia lambl... 35 2.5
UniRef50_Q8D7J2 Cluster: Transcriptional regulator; n=8; Vibrion... 35 3.3
UniRef50_Q6MSX4 Cluster: Putative uncharacterized protein; n=1; ... 35 3.3
UniRef50_UPI0000F2E7A1 Cluster: PREDICTED: similar to vegetative... 34 4.3
UniRef50_A3RYW5 Cluster: Co-activator of prophage gene expressio... 34 4.3
UniRef50_A6AQH2 Cluster: Transcriptional regulator, LysR family;... 34 5.7
UniRef50_Q47ZN8 Cluster: Transcriptional regulator, LysR family;... 33 7.5
UniRef50_A0HHS1 Cluster: Transcriptional regulator, LysR family;... 33 7.5
UniRef50_A2F1M2 Cluster: Putative uncharacterized protein; n=1; ... 33 7.5
UniRef50_Q8ETK1 Cluster: Iron ABC transporter permease; n=2; Fir... 33 10.0
UniRef50_Q22YZ0 Cluster: Leucine Rich Repeat family protein; n=2... 33 10.0
>UniRef50_P77746 Cluster: Uncharacterized HTH-type transcriptional
regulator ybdO; n=16; Enterobacteriaceae|Rep:
Uncharacterized HTH-type transcriptional regulator ybdO
- Escherichia coli (strain K12)
Length = 300
Score = 173 bits (422), Expect = 4e-42
Identities = 85/85 (100%), Positives = 85/85 (100%)
Frame = +1
Query: 1 ITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDL 180
ITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDL
Sbjct: 184 ITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDL 243
Query: 181 LGIVPYELYNSYRDFLNLKEIKLEH 255
LGIVPYELYNSYRDFLNLKEIKLEH
Sbjct: 244 LGIVPYELYNSYRDFLNLKEIKLEH 268
Score = 72.1 bits (169), Expect = 2e-11
Identities = 35/40 (87%), Positives = 35/40 (87%)
Frame = +3
Query: 231 LKRDKTRTPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF 350
LK K PLPSIKLYISYNKSSLNNLVFSRFIDRLNESF
Sbjct: 261 LKEIKLEHPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF 300
>UniRef50_P77216 Cluster: Uncharacterized protein ybdN; n=63;
Bacteria|Rep: Uncharacterized protein ybdN - Escherichia
coli (strain K12)
Length = 406
Score = 78.2 bits (184), Expect = 3e-13
Identities = 46/80 (57%), Positives = 49/80 (61%)
Frame = +1
Query: 508 YKIPLPLNILEAARERITWTLNTLPRVCVSFSGRPRLWVNAASDSRTCPTNGAKKSAFGY 687
YKIPLPLNILEAARERITWTLNTLPRVCVSFSG + + G K
Sbjct: 4 YKIPLPLNILEAARERITWTLNTLPRVCVSFSGGKDSGLMLHLTAELARQMGKKICVLFI 63
Query: 688 RLGGRNSLGTINYGQSLREL 747
+ S TINY QSLREL
Sbjct: 64 DWEAQFSC-TINYVQSLREL 82
>UniRef50_A6T677 Cluster: Putative transcriptional regulator; n=1;
Klebsiella pneumoniae subsp. pneumoniae MGH 78578|Rep:
Putative transcriptional regulator - Klebsiella
pneumoniae subsp. pneumoniae MGH 78578
Length = 310
Score = 46.0 bits (104), Expect = 0.001
Identities = 24/83 (28%), Positives = 41/83 (49%)
Frame = +1
Query: 13 STYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGIV 192
++ E + E FT I+ + +Q R I+FR S +TI+N I TDL+G +
Sbjct: 187 TSVESLAQEFFTHYITNDPVIQRVQQSSIAWLNPRNIAFRSDSFMTILNMINKTDLIGFL 246
Query: 193 PYELYNSYRDFLNLKEIKLEHRY 261
P LY+ + L I +++ +
Sbjct: 247 PSYLYDFISPTMQLHAINIDNLF 269
>UniRef50_Q3ZUZ6 Cluster: Putative uncharacterized protein; n=2;
Enterobacter sakazakii|Rep: Putative uncharacterized
protein - Enterobacter sakazakii
Length = 320
Score = 44.0 bits (99), Expect = 0.005
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +1
Query: 7 DNSTYEQIMAEE-FTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLL 183
D E +A+E FT + G ++ E F R+I+F +S+ +I+ I TD +
Sbjct: 185 DEHADEAALAQEKFTLFNGTAEGQKQFHVKSAELFGERQIAFTSNSISSIMAVIGSTDFV 244
Query: 184 GIVPYELYNSYRDFLNLKEIKL 249
GI+P + YR L+ +KL
Sbjct: 245 GILPAPVLRRYRQLFGLRPVKL 266
>UniRef50_P30979 Cluster: Uncharacterized HTH-type transcriptional
regulator ybeF; n=23; Enterobacteriaceae|Rep:
Uncharacterized HTH-type transcriptional regulator ybeF
- Escherichia coli (strain K12)
Length = 317
Score = 38.7 bits (86), Expect = 0.20
Identities = 16/55 (29%), Positives = 31/55 (56%)
Frame = +1
Query: 52 LISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSY 216
L+ + ++ + E F +R+I+F ++LTI +A +D+L I+P YN +
Sbjct: 217 LLPEEQNFSGLRQRVQEMFPDRQINFTSYNILTIAALVANSDMLAIIPSRFYNLF 271
>UniRef50_Q486J0 Cluster: Transcriptional regulator, LysR family;
n=1; Colwellia psychrerythraea 34H|Rep: Transcriptional
regulator, LysR family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 306
Score = 37.5 bits (83), Expect = 0.46
Identities = 20/82 (24%), Positives = 44/82 (53%), Gaps = 3/82 (3%)
Frame = +1
Query: 7 DNSTYEQIMAEEF---TQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTD 177
D+ + ++ +AE+ +QL K + ++ DE RKI+++ +S++ ++ I D
Sbjct: 183 DSISIDEFLAEKHVTHSQLDQKGGYLSGKGLKEDEILNQRKIAWQAASIMEMLPVIECCD 242
Query: 178 LLGIVPYELYNSYRDFLNLKEI 243
+ ++P L + YR LK++
Sbjct: 243 YIALLPQRLVDKYRHIYQLKQL 264
>UniRef50_Q8GA37 Cluster: Z1203 protein; n=19; Bacteria|Rep: Z1203
protein - Escherichia coli
Length = 410
Score = 37.1 bits (82), Expect = 0.61
Identities = 16/33 (48%), Positives = 24/33 (72%)
Frame = +2
Query: 599 FLGGQDSGLMLHLTAELARQMGQKNLRLVIDWE 697
F GG+DS ++LHL A++AR+ ++ L IDWE
Sbjct: 38 FSGGKDSTVLLHLAADVARRKKRRFSVLFIDWE 70
Score = 33.1 bits (72), Expect = 10.0
Identities = 16/32 (50%), Positives = 18/32 (56%)
Frame = +1
Query: 511 KIPLPLNILEAARERITWTLNTLPRVCVSFSG 606
KI N+L AA RI W T VC+SFSG
Sbjct: 9 KILAGKNVLYAAIHRIEWLFETFSSVCLSFSG 40
>UniRef50_Q15UP0 Cluster: Transcriptional regulator, LysR family;
n=3; Proteobacteria|Rep: Transcriptional regulator, LysR
family - Pseudoalteromonas atlantica (strain T6c /
BAA-1087)
Length = 305
Score = 37.1 bits (82), Expect = 0.61
Identities = 17/52 (32%), Positives = 26/52 (50%)
Frame = +1
Query: 61 KSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGIVPYELYNSY 216
+ G I + +D+ + R++ RG LT+ I TDL+ VPY L Y
Sbjct: 203 RRTGAGPIDVALDKLNLKRRVVMRGQHFLTVPAVIVKTDLIACVPYHLAKHY 254
>UniRef50_A6P8I1 Cluster: Transcriptional regulator, LysR family;
n=1; Shewanella sediminis HAW-EB3|Rep: Transcriptional
regulator, LysR family - Shewanella sediminis HAW-EB3
Length = 300
Score = 35.5 bits (78), Expect = 1.9
Identities = 23/79 (29%), Positives = 35/79 (44%)
Frame = +1
Query: 1 ITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDL 180
I D + ++ E + + + + + DE RK+ SSLLT +S+A +D
Sbjct: 183 IGDKISRDEYFDERHVVIKMRRFNLTAVDLLTDEVLPARKVYSVKSSLLTAFDSLASSDS 242
Query: 181 LGIVPYELYNSYRDFLNLK 237
L I P Y D NLK
Sbjct: 243 LCISPRRYAEEYTDMFNLK 261
>UniRef50_A6CYW8 Cluster: Transcriptional regulator; n=5;
Vibrio|Rep: Transcriptional regulator - Vibrio shilonii
AK1
Length = 313
Score = 35.5 bits (78), Expect = 1.9
Identities = 19/81 (23%), Positives = 39/81 (48%)
Frame = +1
Query: 7 DNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLG 186
D T EQ +AE+ + + F RKI +R + + ++ +I+ TD +G
Sbjct: 195 DTITTEQYLAEQHVVMSQWQTRKSFFNEKDFPEFGKRKIMYRAAGEVDMLPAISQTDAIG 254
Query: 187 IVPYELYNSYRDFLNLKEIKL 249
I+ + +N + L++K + +
Sbjct: 255 IITHSTFNKFAVGLDVKALMM 275
>UniRef50_Q7R6B3 Cluster: GLP_574_73762_71381; n=1; Giardia lamblia
ATCC 50803|Rep: GLP_574_73762_71381 - Giardia lamblia
ATCC 50803
Length = 793
Score = 35.1 bits (77), Expect = 2.5
Identities = 18/42 (42%), Positives = 26/42 (61%)
Frame = +1
Query: 613 RLWVNAASDSRTCPTNGAKKSAFGYRLGGRNSLGTINYGQSL 738
+L + A S +T T+G KSA R GGR+ +G+I GQ+L
Sbjct: 435 QLAIIAISGEKTTRTDGHSKSADTARSGGRSGIGSIRLGQAL 476
>UniRef50_Q8D7J2 Cluster: Transcriptional regulator; n=8;
Vibrionales|Rep: Transcriptional regulator - Vibrio
vulnificus
Length = 301
Score = 34.7 bits (76), Expect = 3.3
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 1/84 (1%)
Frame = +1
Query: 1 ITDNSTYEQIMAEEFTQLISKSAGVDDIQMEID-ERFMNRKISFRGSSLLTIINSIAVTD 177
I D + Q +AEE ++S+ + E D RKI++R S L ++ I ++
Sbjct: 180 IADACSVAQFLAEEHV-VVSRWHARKSLMSEEDIADLAQRKIAYRASGALEMLPVIHGSE 238
Query: 178 LLGIVPYELYNSYRDFLNLKEIKL 249
+G++P N++ N+K + L
Sbjct: 239 YIGMLPESTINAFAGTYNIKAVSL 262
>UniRef50_Q6MSX4 Cluster: Putative uncharacterized protein; n=1;
Mycoplasma mycoides subsp. mycoides SC|Rep: Putative
uncharacterized protein - Mycoplasma mycoides subsp.
mycoides SC
Length = 154
Score = 34.7 bits (76), Expect = 3.3
Identities = 23/82 (28%), Positives = 41/82 (50%)
Frame = +3
Query: 222 LS*LKRDKTRTPLPSIKLYISYNKSSLNNLVFSRFIDRLNESF*YITTDSYYNFHLFIHS 401
LS + +T+ +P +K + +K + NNL+ +++I + F I D YY F
Sbjct: 18 LSEINLAETKVRIPKVKPFKMQDKINFNNLIKTKYIIEDHCFFSSIVYDIYYQFD---EQ 74
Query: 402 ANEK*NTLLYSVYFIINRLISL 467
AN + +L ++ + N L SL
Sbjct: 75 ANNRSFAVLQTIRQVYNELTSL 96
>UniRef50_UPI0000F2E7A1 Cluster: PREDICTED: similar to vegetative
cell wall protein gp1; n=1; Monodelphis domestica|Rep:
PREDICTED: similar to vegetative cell wall protein gp1 -
Monodelphis domestica
Length = 184
Score = 34.3 bits (75), Expect = 4.3
Identities = 16/46 (34%), Positives = 21/46 (45%)
Frame = -3
Query: 890 PGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPEFSWYP 753
P P + TP+P + HP +P P I ASP FS +P
Sbjct: 119 PSPSIPITQCTPSPSIPIAQHPHRPASPSPSIPIVLPASPSFSQHP 164
>UniRef50_A3RYW5 Cluster: Co-activator of prophage gene expression
IbrA; n=7; Proteobacteria|Rep: Co-activator of prophage
gene expression IbrA - Ralstonia solanacearum UW551
Length = 416
Score = 34.3 bits (75), Expect = 4.3
Identities = 17/35 (48%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
Frame = +2
Query: 599 FLGGQDSGLMLHLTAELARQMGQKNLR-LVIDWEG 700
F GG+DS + LHL E+AR+MG+ + ID EG
Sbjct: 32 FSGGKDSSVTLHLALEVAREMGRGPVHAFFIDLEG 66
>UniRef50_A6AQH2 Cluster: Transcriptional regulator, LysR family;
n=1; Vibrio harveyi HY01|Rep: Transcriptional regulator,
LysR family - Vibrio harveyi HY01
Length = 307
Score = 33.9 bits (74), Expect = 5.7
Identities = 14/46 (30%), Positives = 27/46 (58%)
Frame = +1
Query: 115 RKISFRGSSLLTIINSIAVTDLLGIVPYELYNSYRDFLNLKEIKLE 252
R+++++ S++ I+ I D L ++P L YR NL+E++ E
Sbjct: 222 RQVAWQAGSIIEILPLIQRCDYLALMPQTLLEQYRKLYNLRELEAE 267
>UniRef50_Q47ZN8 Cluster: Transcriptional regulator, LysR family;
n=1; Colwellia psychrerythraea 34H|Rep: Transcriptional
regulator, LysR family - Colwellia psychrerythraea
(strain 34H / ATCC BAA-681) (Vibriopsychroerythus)
Length = 312
Score = 33.5 bits (73), Expect = 7.5
Identities = 15/62 (24%), Positives = 32/62 (51%)
Frame = +1
Query: 10 NSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLLGI 189
N + +AE+ L + V + + + + NR+I + +S+ I+ ++ TDL+ I
Sbjct: 189 NLLLSEYLAEKHAVLAPRKGNVYPLSLALQDFSYNREIKYTSTSIENILEIVSATDLICI 248
Query: 190 VP 195
+P
Sbjct: 249 MP 250
>UniRef50_A0HHS1 Cluster: Transcriptional regulator, LysR family;
n=1; Comamonas testosteroni KF-1|Rep: Transcriptional
regulator, LysR family - Comamonas testosteroni KF-1
Length = 295
Score = 33.5 bits (73), Expect = 7.5
Identities = 19/86 (22%), Positives = 38/86 (44%)
Frame = +1
Query: 1 ITDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDL 180
I DN T + E + + G + ++ E+ + R ++ +L + N +A TDL
Sbjct: 176 IDDNLTMTRFKTERHVIITAPGTGNEIVEQELKRQGAQRNVALSLPTLPGVGNLLAHTDL 235
Query: 181 LGIVPYELYNSYRDFLNLKEIKLEHR 258
+ VP+ + + +K I +R
Sbjct: 236 IATVPHRIAQTLVKIAQVKAIASPYR 261
>UniRef50_A2F1M2 Cluster: Putative uncharacterized protein; n=1;
Trichomonas vaginalis G3|Rep: Putative uncharacterized
protein - Trichomonas vaginalis G3
Length = 1349
Score = 33.5 bits (73), Expect = 7.5
Identities = 26/103 (25%), Positives = 49/103 (47%), Gaps = 2/103 (1%)
Frame = +1
Query: 10 NSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTI--INSIAVTDLL 183
N T E + +EE LI ++ VD ++ ++ + + + + +L I N A L
Sbjct: 387 NGTMENLSSEERLFLIQENGMVDLFYLQNNDFIYSETLKWAANKILPIKMTNRFAFAVLN 446
Query: 184 GIVPYELYNSYRDFLNLKEIKLEHRYLQ*SFTFPIINLL*IIW 312
Y+ Y DF L K++++ Q +F ++NLL I++
Sbjct: 447 KYRDLVFYD-YNDFSVLTRKKIDYKKFQNAFFDSLLNLLVIVY 488
>UniRef50_Q8ETK1 Cluster: Iron ABC transporter permease; n=2;
Firmicutes|Rep: Iron ABC transporter permease -
Oceanobacillus iheyensis
Length = 349
Score = 33.1 bits (72), Expect = 10.0
Identities = 24/80 (30%), Positives = 38/80 (47%), Gaps = 3/80 (3%)
Frame = +2
Query: 470 HPVTFRERLQMSIIKFL---FRSIFWKLHESVLPGHSTPYPAFVSHFLGGQDSGLMLHLT 640
+P+T L ++I+ +I W H+ L P F S G QD+ ML T
Sbjct: 48 YPITIEHALGETVIESKPERIATIQWGNHDDALALGVVPV-GFSSANYGVQDNSGMLPWT 106
Query: 641 AELARQMGQKNLRLVIDWEG 700
AE +++G++N L D +G
Sbjct: 107 AEKVQELGEENPNLFQDTDG 126
>UniRef50_Q22YZ0 Cluster: Leucine Rich Repeat family protein; n=2;
Tetrahymena thermophila SB210|Rep: Leucine Rich Repeat
family protein - Tetrahymena thermophila SB210
Length = 1158
Score = 33.1 bits (72), Expect = 10.0
Identities = 21/85 (24%), Positives = 44/85 (51%)
Frame = +1
Query: 4 TDNSTYEQIMAEEFTQLISKSAGVDDIQMEIDERFMNRKISFRGSSLLTIINSIAVTDLL 183
TD + Q++ E FT+ + A + ++IDE N+ I+ + + +A +L
Sbjct: 1005 TDMVKHFQLLNESFTEKDVQIAFNLSMMIQIDEINNNKFINMSFIEFIEALGRVAEKKIL 1064
Query: 184 GIVPYELYNSYRDFLNLKEIKLEHR 258
+P E+ S ++++ +IKLE++
Sbjct: 1065 --LPLEMLKSIQNYVETDQIKLEYK 1087
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 865,564,456
Number of Sequences: 1657284
Number of extensions: 18095615
Number of successful extensions: 45334
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 42670
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45211
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81981722200
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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