Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0272.Seq
         (904 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Triboliu...    23   3.3  
AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase ...    23   3.3  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    23   3.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    23   3.3  
AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochr...    22   5.7  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        22   7.6  

>S73225-1|AAB30811.1|  327|Tribolium castaneum protein ( Tribolium
           castaneum homeodomainprotein mRNA, complete cds. ).
          Length = 327

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 14/48 (29%), Positives = 23/48 (47%)
 Frame = -3

Query: 662 PFVGQVRLSDAALTQSLGRPENETQTRGRVLSVQVIRSRAASRILSGR 519
           P VG V  +   +  S   PE +T+++  +    V  +R + R  SGR
Sbjct: 160 PEVGGVEEAKGPVDLSKSEPEKKTESQPMLWPAWVYCTRYSDRPSSGR 207


>AY362543-1|AAQ63455.1|  677|Tribolium castaneum chitin synthase
           protein.
          Length = 677

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 827 PXLXFAPPPMIXXSTDASPEFSW 759
           P L F PPP++      S + +W
Sbjct: 197 PYLFFVPPPLMFLQDFLSHQHAW 219


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 827 PXLXFAPPPMIXXSTDASPEFSW 759
           P L F PPP++      S + +W
Sbjct: 430 PYLFFVPPPLMFLQDFLSHQHAW 452


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 23.0 bits (47), Expect = 3.3
 Identities = 8/23 (34%), Positives = 12/23 (52%)
 Frame = -3

Query: 827 PXLXFAPPPMIXXSTDASPEFSW 759
           P L F PPP++      S + +W
Sbjct: 430 PYLFFVPPPLMFLQDFLSHQHAW 452


>AF265300-1|AAG17643.1|  126|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 126

 Score = 22.2 bits (45), Expect = 5.7
 Identities = 7/17 (41%), Positives = 12/17 (70%)
 Frame = +2

Query: 464 TDHPVTFRERLQMSIIK 514
           +D P+TF + LQM  ++
Sbjct: 33  SDRPITFNDTLQMKYLE 49


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 21.8 bits (44), Expect = 7.6
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = +2

Query: 527 SIFWKLHESVLPGHST 574
           S+  +L+ S +PGHST
Sbjct: 317 SVMTELYPSPVPGHST 332



 Score = 21.4 bits (43), Expect = 10.0
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 231 LKRDKTRTPLPSIKLYISYNKSSLNNL 311
           L  +    P PS  +Y S N   LNN+
Sbjct: 338 LTHNIAHNPYPSHSIYPSSNLMPLNNI 364


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,923
Number of Sequences: 336
Number of extensions: 4549
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 25134219
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)