Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0272.Seq
         (904 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    28   2.1  
SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyce...    26   6.4  

>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 22/68 (32%), Positives = 27/68 (39%)
 Frame = -3

Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPEFSWYPL*SSRRD*P*LM 717
           P   P    +  TPAP P V+ HP     PPP +  S   SP     PL  +    P   
Sbjct: 721 PAIKPQVTPAPPTPAPTPAVKHHP-----PPPPVRSS--ISPSMPPAPLTHANSSTPMNY 773

Query: 716 VPRELRPP 693
           V +   PP
Sbjct: 774 VSQPESPP 781


>SPBC215.12 |cwf10|spef2, snu114|GTPase Cwf10 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 983

 Score = 26.2 bits (55), Expect = 6.4
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +1

Query: 577 LPRVCVSFSGRPRLWVNAASDSRTCPTNGAKKSAFGYRLGGRNSLGTINYGQSLRELQR 753
           L  +C SF G P  +VNA +     P   A + A    +G  NS    + G+++ E+ R
Sbjct: 427 LQLICASFFGFPVGFVNAVTRHIPSPRENAARKASQSYIGPINS----SIGKAILEMSR 481


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,558,038
Number of Sequences: 5004
Number of extensions: 73326
Number of successful extensions: 172
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 456499320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)