Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0272.Seq
         (904 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0547 - 26152892-26153194,26153248-26153329,26153349-261537...    30   2.2  
08_02_1436 + 27083698-27084111,27084333-27084416,27084502-270845...    29   5.1  
02_05_1241 - 35189111-35189389,35189604-35189711,35189982-351907...    29   5.1  
12_02_1031 + 25537495-25537552,25538774-25538836,25538966-255392...    29   6.7  
02_05_0907 - 32663544-32663623,32663673-32663863,32664065-326641...    28   8.8  

>04_04_0547 -
           26152892-26153194,26153248-26153329,26153349-26153707,
           26154366-26154404,26154998-26155168,26155651-26155725,
           26156858-26157055,26157208-26157402
          Length = 473

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 14/53 (26%), Positives = 25/53 (47%)
 Frame = +2

Query: 530 IFWKLHESVLPGHSTPYPAFVSHFLGGQDSGLMLHLTAELARQMGQKNLRLVI 688
           IF  L+  ++ GH TP P      + G++  L  HL + + R    + L + +
Sbjct: 197 IFQTLYLIIVFGHKTPEPLGYKFNISGEELDLFAHLGSNMTRYSSMEELSVAL 249


>08_02_1436 +
           27083698-27084111,27084333-27084416,27084502-27084551,
           27084676-27084724,27085471-27085545,27085724-27085837
          Length = 261

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 771 RVFMVPPLKFAQGLTIVNGAKRIAPSQSI 685
           R+++  PL F +GLT   G  R+APS  +
Sbjct: 218 RLYIPGPLAFPKGLTSAPGRPRVAPSSPV 246


>02_05_1241 -
           35189111-35189389,35189604-35189711,35189982-35190713,
           35190811-35191230,35191484-35191565,35191719-35192002,
           35193104-35193256
          Length = 685

 Score = 29.1 bits (62), Expect = 5.1
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +1

Query: 649 CPTNGAKKSAFGYRLGGRNSLGTINYGQSLRELQRGY 759
           C T+G  KS     LG R  + T+    S+R + RG+
Sbjct: 159 CGTSGCGKSTLSSLLGSRLGITTVVSTDSIRHMMRGF 195


>12_02_1031 +
           25537495-25537552,25538774-25538836,25538966-25539279,
           25539361-25539612,25539698-25540411
          Length = 466

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 16/40 (40%), Positives = 18/40 (45%)
 Frame = +1

Query: 736 LRELQRGYHENSGLASVDXXIIGGGANXSXGCPRTCGPGA 855
           L  + RG  EN  +  VD    GGGA    G   TCG  A
Sbjct: 229 LEVVDRGSEENVRVVEVDNGGGGGGAARGCGRRSTCGAAA 268


>02_05_0907 -
           32663544-32663623,32663673-32663863,32664065-32664162,
           32664406-32664519,32664589-32664646,32664778-32664867,
           32665414-32665505,32665898-32666008,32666120-32666374,
           32666512-32666577,32666725-32666853
          Length = 427

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 691 LGGRNSLGTINYGQSLRELQRGYHENSGLASVDXXIIGGGA 813
           +GG NSLGT  Y +++RE++    + SG    D  ++  G+
Sbjct: 209 VGGSNSLGTWGYIEAIREIEHQI-QISGDVQFDDIVVACGS 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,326,188
Number of Sequences: 37544
Number of extensions: 506484
Number of successful extensions: 1333
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1247
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1329
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)