Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0272.Seq
(904 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2) 35 0.10
SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27) 35 0.10
SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7) 34 0.14
SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6) 34 0.18
SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.18
SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14) 34 0.18
SB_42387| Best HMM Match : CH (HMM E-Value=2.7) 33 0.24
SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.32
SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.42
SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.55
SB_53945| Best HMM Match : POPLD (HMM E-Value=1) 31 1.3
SB_47005| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2) 31 1.3
SB_23088| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3) 31 1.3
SB_24167| Best HMM Match : FF (HMM E-Value=9.2) 31 1.3
SB_18429| Best HMM Match : FF (HMM E-Value=9.2) 31 1.3
SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.3
SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29) 31 1.7
SB_36313| Best HMM Match : Crl (HMM E-Value=5.1) 30 2.2
SB_6505| Best HMM Match : FA_desaturase (HMM E-Value=1.4e-40) 29 3.9
SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011) 29 5.1
SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3) 29 6.8
SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 6.8
SB_8845| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.2) 29 6.8
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.0
>SB_15319| Best HMM Match : Transposase_9 (HMM E-Value=3.2)
Length = 782
Score = 34.7 bits (76), Expect = 0.10
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 899 LPCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
+P P P T S TPA GP +R L P P + + A P+
Sbjct: 65 IPAPAPTTPTSPATPASGPPIRTPIPLRETPTPALDSAPAAMPD 108
>SB_8646| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-27)
Length = 522
Score = 34.7 bits (76), Expect = 0.10
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 899 LPCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
+P P P T S TPA GP +R L P P + + A P+
Sbjct: 427 IPAPAPTTPTSPATPASGPPIRTPIPLKETPTPALESAPAAMPD 470
>SB_40933| Best HMM Match : DUF548 (HMM E-Value=1.7)
Length = 682
Score = 34.3 bits (75), Expect = 0.14
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 899 LPCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
+P P P T S TPA GP +R L P P + + A P+
Sbjct: 126 IPAPAPTTPTSPATPASGPPIRTPIPLKETPTPELESAPAAMPD 169
>SB_20236| Best HMM Match : Pec_lyase_N (HMM E-Value=6.6)
Length = 697
Score = 33.9 bits (74), Expect = 0.18
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P P T S TPA GP +R L P P + + A P+
Sbjct: 36 PAPAPTTPTSPATPASGPPIRTPIPLKETPTPALESAPAAMPD 78
>SB_56225| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 494
Score = 33.9 bits (74), Expect = 0.18
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 899 LPCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
+P P P T S TPA GP +R L P P + + A P+
Sbjct: 86 IPAPAPTTPTSPATPASGPPIRTPIPLKETPNPALESAPAAIPD 129
>SB_22331| Best HMM Match : fn3 (HMM E-Value=7.1e-14)
Length = 908
Score = 33.9 bits (74), Expect = 0.18
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P P T S TPA GP +R L P P + + A P+
Sbjct: 434 PAPAPTTPNSPATPASGPPIRTPIPLRETPTPALESAPAAMPD 476
>SB_42387| Best HMM Match : CH (HMM E-Value=2.7)
Length = 703
Score = 33.5 bits (73), Expect = 0.24
Identities = 16/43 (37%), Positives = 20/43 (46%)
Frame = -3
Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P P T S TPA GP +R L P P + + A P+
Sbjct: 196 PAPAPTTPTSPVTPASGPPIRTPIPLKETPTPALESAAAAMPD 238
>SB_6877| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 422
Score = 33.1 bits (72), Expect = 0.32
Identities = 16/44 (36%), Positives = 21/44 (47%)
Frame = -3
Query: 899 LPCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
+P P P T S TPA GP +R L P P + + A P+
Sbjct: 118 IPAPTPTTPTSPATPARGPPIRTPIPLKEPPTPALESAPAAMPD 161
>SB_56934| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2541
Score = 32.7 bits (71), Expect = 0.42
Identities = 16/43 (37%), Positives = 19/43 (44%)
Frame = -3
Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P P T S TPA G +R L P P + S A P+
Sbjct: 538 PAPAPTTPTSPATPASGAPIRAPIPLKETPSPALESSPAAMPD 580
>SB_42709| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1616
Score = 32.3 bits (70), Expect = 0.55
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 899 LPCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
+P P P T S TPA GP R L P P + + A P+
Sbjct: 1231 IPAPTPTTPTSPATPASGPLTRTPILLKKTPTPALESAPAAMPD 1274
>SB_53945| Best HMM Match : POPLD (HMM E-Value=1)
Length = 465
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 890 PGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P T S TPA GP +R L P P + + A P+
Sbjct: 36 PAPTTPTSPATPASGPPIRTPIPLKETPTPALESAPAAMPD 76
>SB_47005| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 289
Score = 31.1 bits (67), Expect = 1.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -3
Query: 890 PGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P T S TP GP +R L P P + + +A P+
Sbjct: 36 PAPTTPTSPATPTSGPPIRTPIPLKETPTPALESAPEAMPD 76
>SB_45934| Best HMM Match : Gp-FAR-1 (HMM E-Value=2)
Length = 694
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 890 PGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P T S TPA GP +R L P P + + A P+
Sbjct: 144 PAPTTPTSPATPASGPPIRTPIPLKETPTPALESAPAAMPD 184
>SB_23088| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 634
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 890 PGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P T S TPA GP +R L P P + + A P+
Sbjct: 40 PAPTTPTSPATPASGPPIRTPIPLRETPTPALESAPAAMPD 80
>SB_46598| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1910
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 890 PGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P T S TPA GP +R L P P + + A P+
Sbjct: 120 PAPTTPTSLATPASGPPIRTPIPLKETPTPALESAPAAMPD 160
>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
Length = 736
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 890 PGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P T S TPA GP +R L P P + + A P+
Sbjct: 65 PAPTTPTSPATPASGPPIRTPIPLKETPTPALESAPAAMPD 105
>SB_24167| Best HMM Match : FF (HMM E-Value=9.2)
Length = 482
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 890 PGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P T S TPA GP +R L P P + + A P+
Sbjct: 12 PAPTTPTSPATPASGPPIRTPIPLKETPTPALESAPAAMPD 52
>SB_18429| Best HMM Match : FF (HMM E-Value=9.2)
Length = 456
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/41 (36%), Positives = 19/41 (46%)
Frame = -3
Query: 890 PGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P T S TPA GP +R L P P + + A P+
Sbjct: 12 PAPTTPTSPATPASGPPIRTPIPLKETPTPALESAPAAMPD 52
>SB_1754| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1521
Score = 31.1 bits (67), Expect = 1.3
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P P T S TPA G +R L P P + + A P+
Sbjct: 63 PAPAPTTPTSPATPASGVPIRAPIPLKETPSPALESAPAAMPD 105
>SB_43553| Best HMM Match : Gp-FAR-1 (HMM E-Value=0.29)
Length = 1851
Score = 30.7 bits (66), Expect = 1.7
Identities = 15/43 (34%), Positives = 19/43 (44%)
Frame = -3
Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P P T S TPA G +R L P P + + A P+
Sbjct: 36 PAPAPTTPTSPATPASGAPIRTPIPLKETPSPALESAPAAMPD 78
>SB_36313| Best HMM Match : Crl (HMM E-Value=5.1)
Length = 442
Score = 30.3 bits (65), Expect = 2.2
Identities = 15/44 (34%), Positives = 20/44 (45%)
Frame = -3
Query: 899 LPCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
+P P P T S TPA GP +R L P + + A P+
Sbjct: 124 IPAPTPTTPTSPATPASGPPIRTPIPLKETPTQPLESAPAAMPD 167
>SB_6505| Best HMM Match : FA_desaturase (HMM E-Value=1.4e-40)
Length = 361
Score = 29.5 bits (63), Expect = 3.9
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 4/49 (8%)
Frame = +2
Query: 476 VTFRERLQMSIIKFLFRSIFWKLHE---SVLPGHSTPYP-AFVSHFLGG 610
V +ER+++ +++F+ +FW + S LP ST + F++HFL G
Sbjct: 235 VLSKERVKLRVMEFVTMVLFWTWYLTLCSYLPTWSTRFAFVFLAHFLAG 283
>SB_37150| Best HMM Match : 7tm_1 (HMM E-Value=0.011)
Length = 211
Score = 29.1 bits (62), Expect = 5.1
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -3
Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P P T S TPA +R L P P + + A P+
Sbjct: 163 PAPAPTTPTSPATPASAAPIRAPIPLKETPSPALESAPAAMPD 205
>SB_43814| Best HMM Match : RRM_1 (HMM E-Value=1.3)
Length = 642
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 475 CNVQRASSDVYYKIPLPLNILEAARERITWTLNTLPRVC 591
C R +S + ++PLP N ++ RE+I L +P C
Sbjct: 30 CMASRIASSLESRLPLPYNFVQDVREKI---LELIPEEC 65
>SB_17592| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3592
Score = 28.7 bits (61), Expect = 6.8
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = +1
Query: 475 CNVQRASSDVYYKIPLPLNILEAARERITWTLNTLPRVC 591
C R +S + ++PLP N ++ RE+I L +P C
Sbjct: 2306 CMASRIASSLESRLPLPYNFVQDVREKI---LELIPEEC 2341
>SB_23350| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 704
Score = 28.7 bits (61), Expect = 6.8
Identities = 14/43 (32%), Positives = 18/43 (41%)
Frame = -3
Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
P P P T S TP G +R L P P + + A P+
Sbjct: 282 PAPAPTTPTSAVTPVSGAPIRTPIPLKETPSPALESAPAAMPD 324
>SB_8845| Best HMM Match : Ribosomal_L30_N (HMM E-Value=1.2)
Length = 490
Score = 28.7 bits (61), Expect = 6.8
Identities = 15/44 (34%), Positives = 19/44 (43%)
Frame = -3
Query: 899 LPCPGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
+P P P T S PA GP R L P P + + A P+
Sbjct: 144 IPAPTPTTPTSPVIPASGPPTRTPIPLKETPTPGLESAPAAMPD 187
>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1351
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/22 (50%), Positives = 13/22 (59%)
Frame = -3
Query: 899 LPCPGPXTXXSTRTPAPGPQVR 834
+P P P T S TPA GP +R
Sbjct: 250 IPAPTPTTPTSPATPASGPPIR 271
>SB_1753| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 377
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 592 VSFSGRPRLWVNAASDSRTC 651
V+F+ RP+L N SD+RTC
Sbjct: 178 VNFNSRPQLVTNEKSDTRTC 197
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,654,455
Number of Sequences: 59808
Number of extensions: 553417
Number of successful extensions: 1163
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1161
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2597949818
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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