Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0272.Seq
         (904 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g11990.1 68418.m01402 proline-rich family protein contains pr...    29   4.2  
At4g38490.1 68417.m05440 expressed protein                             29   5.6  
At2g36500.1 68415.m04480 CBS domain-containing protein / octicos...    29   5.6  
At1g09300.1 68414.m01041 metallopeptidase M24 family protein sim...    29   5.6  
At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1 (MSH...    28   9.7  
At3g19430.1 68416.m02464 late embryogenesis abundant protein-rel...    28   9.7  
At2g21850.1 68415.m02596 DC1 domain-containing protein contains ...    28   9.7  

>At5g11990.1 68418.m01402 proline-rich family protein contains
           proline-rich extensin domains, INTERPRO:IPR002965
          Length = 181

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 15/49 (30%), Positives = 20/49 (40%), Gaps = 2/49 (4%)
 Frame = -3

Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXL--XFAPPPMIXXSTDASPEFSWY 756
           P P P    S+  P P P     P L    +PPP+I       P F ++
Sbjct: 55  PPPSPSLPLSSSPPPPPPHKHSPPPLSQSLSPPPLITVIHPPPPRFYYF 103


>At4g38490.1 68417.m05440 expressed protein
          Length = 153

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -2

Query: 732 LTIVNGAKRIAPSQSITKRRFFCPIC 655
           L+ V+G  R+APS  I +R  F PIC
Sbjct: 8   LSTVSGVIRLAPSHRILRRDGFGPIC 33


>At2g36500.1 68415.m04480 CBS domain-containing protein /
           octicosapeptide/Phox/Bemp1 (PB1) domain-containing
           protein contains Pfam profiles: PF00571 CBS domain,
           PF00564: PB1 domain
          Length = 536

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 19/49 (38%), Positives = 28/49 (57%)
 Frame = +2

Query: 611 QDSGLMLHLTAELARQMGQKNLRLVIDWEGAILLAPLTMVSPCANFRGG 757
           +DS L+  +T   AR +GQK LRL +D+   I  APL  ++  +   GG
Sbjct: 463 RDSDLVAAVT--FARSLGQKVLRLHLDFTETI--APLETIADLSEGNGG 507


>At1g09300.1 68414.m01041 metallopeptidase M24 family protein
           similar to SP|P15034 Xaa-Pro aminopeptidase (EC
           3.4.11.9) (X-Pro aminopeptidase) (Aminopeptidase P II)
           (Aminoacylproline aminopeptidase) {Escherichia coli};
           contains Pfam profiles PF00557: metallopeptidase family
           M24, PF05195: Aminopeptidase P, N-terminal domain
          Length = 493

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 17/74 (22%), Positives = 34/74 (45%)
 Frame = +1

Query: 535 LEAARERITWTLNTLPRVCVSFSGRPRLWVNAASDSRTCPTNGAKKSAFGYRLGGRNSLG 714
           L+  RE  +     L +  +   G P   + +A     C   GA++ AF   +GG ++  
Sbjct: 217 LKLMRESASIACQGLLKTMLHSKGFPDEGILSAQVEYECRVRGAQRMAFNPVVGGGSNAS 276

Query: 715 TINYGQSLRELQRG 756
            I+Y ++ + ++ G
Sbjct: 277 VIHYSRNDQRIKDG 290


>At4g02070.1 68417.m00277 DNA mismatch repair protein MSH6-1
           (MSH6-1) (AGAA.3) identical to SP|O04716 DNA mismatch
           repair protein MSH6-1 (AtMsh6-1) cress] {Arabidopsis
           thaliana}
          Length = 1324

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 11/41 (26%), Positives = 18/41 (43%)
 Frame = -3

Query: 890 PGPXTXXSTRTPAPGPQVRGHPXLXFAPPPMIXXSTDASPE 768
           P P +    R+P+PGP         F  P ++   T + P+
Sbjct: 74  PNPSSNLPARSPSPGPDTPSPVQSKFKKPLLVIGQTPSPPQ 114


>At3g19430.1 68416.m02464 late embryogenesis abundant
           protein-related / LEA protein-related similar to late
           embryogenesis abundant protein [Picea glauca] GI:1350543
          Length = 559

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 14/43 (32%), Positives = 17/43 (39%), Gaps = 1/43 (2%)
 Frame = -3

Query: 896 PCPGPXTXXSTRTPAPGPQVRGHPXLXFAPP-PMIXXSTDASP 771
           P P P    S   P P P V   P +   PP P +    D +P
Sbjct: 173 PMPSPPPPVSPPPPTPTPSVPSPPDVTPTPPTPSVPSPPDVTP 215


>At2g21850.1 68415.m02596 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 772

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 732 LTIVNGAKRIAPSQSITKRRFFCPICRASSAVRCS 628
           L+ V+G+K +A    I K  + C  C  S  ++CS
Sbjct: 535 LSFVSGSKCLACKLEIKKYGYHCSTCNISFHIKCS 569


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,626,901
Number of Sequences: 28952
Number of extensions: 395863
Number of successful extensions: 1038
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 930
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1035
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2129873112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)