Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0268.Seq
         (886 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    24   1.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    23   3.2  
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   5.6  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   5.6  
Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor ...    21   9.7  
AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII pr...    21   9.7  
AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII pr...    21   9.7  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +3

Query: 210  VPRGSAEGRYRGMQIGLFDFEYTHQCQGTSEASKKQKL 323
            VP+  A G +   +  + D++Y  +C G  + ++K +L
Sbjct: 1230 VPQNCAPGLHYNPEEHMCDWKYKVKCVGRKQLAQKYQL 1267


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 23.0 bits (47), Expect = 3.2
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 422 LNSDKGLFQSVERARVQHLLLNLGGVRAP 336
           L+  K + Q V R +  H  LN+  VR+P
Sbjct: 335 LDEKKYILQEVVRVKKPHYELNMVEVRSP 363


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 257 AYLHSPVPPFCRSSRNCSYSALRSPTVS 174
           AYL   V  + R+ R C Y   + P++S
Sbjct: 128 AYLIPEVGTWIRAVRKCLYKLWKMPSLS 155


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 10/28 (35%), Positives = 15/28 (53%)
 Frame = -3

Query: 257 AYLHSPVPPFCRSSRNCSYSALRSPTVS 174
           AYL   V  + R+ R C Y   + P++S
Sbjct: 128 AYLIPEVGTWIRAVRKCLYKLWKMPSLS 155


>Z69735-1|CAA93623.1|  162|Tribolium castaneum initiation factor
           5-like protein protein.
          Length = 162

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/43 (20%), Positives = 17/43 (39%)
 Frame = +1

Query: 73  TVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAE 201
           T+S  CK        +  H+ V F +++   ++    G    E
Sbjct: 31  TISQGCKACGYHSPLESNHKLVTFILKNPPNLNPAVQGSSLTE 73


>AF017415-1|AAB70262.1|  343|Tribolium castaneum abdominal-AII
           protein.
          Length = 343

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 499 NKQLYTRARDETEPALRHSCPDDTRPRH 582
           ++QL+  A  E   A   S P  + P+H
Sbjct: 20  HQQLFQSATTEAPAAYSSSSPSGSSPQH 47


>AF017414-1|AAB70260.1|  209|Tribolium castaneum abdominal-AII
           protein.
          Length = 209

 Score = 21.4 bits (43), Expect = 9.7
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = +1

Query: 499 NKQLYTRARDETEPALRHSCPDDTRPRH 582
           ++QL+  A  E   A   S P  + P+H
Sbjct: 20  HQQLFQSATTEAPAAYSSSSPSGSSPQH 47


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,386
Number of Sequences: 336
Number of extensions: 3854
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 24513621
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)