Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0268.Seq
         (886 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)                        52   5e-07
SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)              50   2e-06
SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)            47   2e-05
SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)             37   0.025
SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)              36   0.058
SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.)               34   0.18 
SB_11461| Best HMM Match : NHL (HMM E-Value=0)                         31   1.2  
SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.2  
SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)                  30   2.2  
SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)            28   8.7  
SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)              28   8.7  

>SB_55463| Best HMM Match : OPA3 (HMM E-Value=0)
          Length = 387

 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 22/62 (35%), Positives = 40/62 (64%)
 Frame = +3

Query: 300 EASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 479
           E + + KL L+ WCPD  ++K +M+ +++F  +KK   G  K ++  + SE S EA++E+
Sbjct: 323 EGADRSKLVLIFWCPDNCEIKSRMVSAATFQDVKKKCPGGAKCLEIQERSELSFEALKEE 382

Query: 480 LR 485
           L+
Sbjct: 383 LK 384


>SB_30343| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 140

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 22/62 (35%), Positives = 38/62 (61%)
 Frame = +3

Query: 300 EASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 479
           E +++ KL L+ WCPD   +K KM+ +++F  + K   G  K ++  D  + S EA++EK
Sbjct: 76  EGAERSKLVLIFWCPDNCGIKNKMVSAATFKEVMKKCPGGAKCLEIQDRFDLSFEALKEK 135

Query: 480 LR 485
           L+
Sbjct: 136 LK 137


>SB_14227| Best HMM Match : Cofilin_ADF (HMM E-Value=0.0013)
          Length = 310

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 22/58 (37%), Positives = 33/58 (56%)
 Frame = +3

Query: 279 HQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSE 452
           H+ Q    A      FL   C D A +KKKML  S+++ LKK   G++KY +A+++ E
Sbjct: 241 HKTQDHRSALSDLVFFLFDRCSDEAPIKKKMLAGSTWEYLKKKFDGLKKYFEASEICE 298


>SB_28028| Best HMM Match : Cofilin_ADF (HMM E-Value=2e-20)
          Length = 151

 Score = 36.7 bits (81), Expect = 0.025
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = +3

Query: 321 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKLRAT 491
           L  +SWC D A ++KKM  +S+ D ++K        + A D  +   + +  K   T
Sbjct: 93  LVFISWCSDKAPIEKKMKLASTQDYVRKKFSEATTSVNANDFDDLDYDEIAAKAEKT 149


>SB_35589| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 150

 Score = 35.5 bits (78), Expect = 0.058
 Identities = 16/53 (30%), Positives = 31/53 (58%)
 Frame = +3

Query: 321 LFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEK 479
           L  + WC D A +KK+M+ +++ + LK   V V+K  Q  D ++ + + + +K
Sbjct: 93  LVYIFWCSDNAPIKKRMVSAATNELLKTKFV-VKKVFQINDRADLNYDDIADK 144



 Score = 30.3 bits (65), Expect = 2.2
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
 Frame = +1

Query: 64  SGVTVSDACKTTYEEIK-KDKKHRYVVFYIRDE----------KQIDVETVGERNAEYEQ 210
           SG+ + D     Y+ ++ K+K H++  F I D+          K++D  T  E  A ++Q
Sbjct: 4   SGIKIDDESLHLYQTMQGKEKSHKFATFKISDDGKMVVIDHILKRVDTHTREEDRAIFDQ 63

Query: 211 FLEDL 225
            LE L
Sbjct: 64  MLEKL 68


>SB_7256| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 157

 Score = 33.9 bits (74), Expect = 0.18
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 4/36 (11%)
 Frame = +2

Query: 452 SVSGGRRREAPRHRSPINSFTH----ELATKPNPLS 547
           + +GGRRRE P  R+P+  F      E A KP+P++
Sbjct: 45  AAAGGRRREGPTARAPVGGFAEVGNAEFAEKPSPIT 80


>SB_11461| Best HMM Match : NHL (HMM E-Value=0)
          Length = 819

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 19/49 (38%), Positives = 29/49 (59%), Gaps = 2/49 (4%)
 Frame = +2

Query: 500 INSFTHELA--TKPNPLSDTPALTTRGHDTTSRLVLLQRKTNSINMIDF 640
           + + T EL+  T+ NPL  TPAL++RG   T R+   + + N+   IDF
Sbjct: 292 LENLTQELSDTTRLNPL--TPALSSRGQRGTPRIPYRESQQNAEGNIDF 338


>SB_8814| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 31.1 bits (67), Expect = 1.2
 Identities = 23/74 (31%), Positives = 27/74 (36%), Gaps = 2/74 (2%)
 Frame = +2

Query: 476 EAPRHRSPINSF-THELATKPNPLSDTPALTTRGHDTTSRLVLLQRKT-NSINMIDFTGG 649
           E  RH + ++   THE       L DT    T  HDTT     L   T N  +  D TG 
Sbjct: 502 ETTRHDTHLHDMHTHETTRHDTHLHDTTENDTHPHDTTGNDTYLHDTTENDTHPHDTTGN 561

Query: 650 RTSCESARVGTTAP 691
            T         T P
Sbjct: 562 DTQLHDTTGNKTRP 575


>SB_27884| Best HMM Match : Pox_A32 (HMM E-Value=0.61)
          Length = 1226

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -2

Query: 489  WRGASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTT 334
            W G + R PP      RS+  TS L   TF ERR           W  P T+
Sbjct: 855  WGGTAERPPPRQSAPSRSMAITSLLCGSTF-ERRTTVLSMGVVSDWSIPATS 905


>SB_44786| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 824

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +2

Query: 413 RSSEVHPSDRPLGSVSGGRRREAPRHRSPINSFTHELATKPNPLSDTPALTTR 571
           R  E+   +R L  +   +RRE    R+  N   HE  T+    S T A  TR
Sbjct: 519 RKDEIEEQNRTLRQLMEEKRREIEGLRAEANQLRHESKTREERESSTIAALTR 571


>SB_50937| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2480

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 19/56 (33%), Positives = 22/56 (39%)
 Frame = -2

Query: 483 GASLRRPPETLPRGRSLGCTSELRQGTFSERRXXXXXXXXX*PWRCPGTTTSGRAS 316
           G + R PP      R +  TS L   TF ERR           W  P T  +G AS
Sbjct: 651 GTAERLPPRQSAPSRFMAITSLLCGSTF-ERRTTVLSMGVVSDWSVPATRCAGTAS 705


>SB_46293| Best HMM Match : Keratin_B2 (HMM E-Value=0.00077)
          Length = 677

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 749 NGCPAFQTETHYCFTAEIGRGRWYLPART 663
           N C  ++T+ ++C T++I +  WY P +T
Sbjct: 190 NWCHPYKTQANWCHTSKI-QSNWYHPNKT 217


>SB_3680| Best HMM Match : Keratin_B2 (HMM E-Value=0.0024)
          Length = 180

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/29 (34%), Positives = 19/29 (65%)
 Frame = -3

Query: 749 NGCPAFQTETHYCFTAEIGRGRWYLPART 663
           N C  ++T+ ++C T++I +  WY P +T
Sbjct: 35  NWCHPYKTQANWCHTSKI-QSNWYHPNKT 62


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,808,246
Number of Sequences: 59808
Number of extensions: 504410
Number of successful extensions: 1524
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1369
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1522
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2526446612
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)