Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0268.Seq
         (886 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.       57   1e-08
AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated...    57   1e-08
L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.       53   2e-07
AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated...    53   2e-07
AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated...    51   1e-06
AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical...    29   4.4  
AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical ...    29   4.4  

>L18963-1|AAC14457.1|  152|Caenorhabditis elegans unc-60 protein.
          Length = 152

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
 Frame = +3

Query: 264 DFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQA 437
           D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK SL G++    +QA
Sbjct: 73  DVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQA 131

Query: 438 TDLSEASQEAVEEKLRATDR 497
           +++S+  +++V+  L +  R
Sbjct: 132 SEMSDLDEKSVKSDLMSNQR 151



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
 Frame = +1

Query: 58  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK 231
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKK 59


>AF024494-2|AAL02463.1|  152|Caenorhabditis elegans Uncoordinated
           protein 60, isoform c protein.
          Length = 152

 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 30/80 (37%), Positives = 49/80 (61%), Gaps = 2/80 (2%)
 Frame = +3

Query: 264 DFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQA 437
           D E T Q QG    S   K+  + +CPD A V+++MLY+SS  ALK SL G++    +QA
Sbjct: 73  DVEVTVQRQGAEGTSTLNKVIFVQYCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQA 131

Query: 438 TDLSEASQEAVEEKLRATDR 497
           +++S+  +++V+  L +  R
Sbjct: 132 SEMSDLDEKSVKSDLMSNQR 151



 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 25/59 (42%), Positives = 40/59 (67%), Gaps = 1/59 (1%)
 Frame = +1

Query: 58  MASGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDLQK 231
           MASGV V  +CK  Y+ +    +H Y++F I +++  I VE VGE+NA Y +F+E+++K
Sbjct: 1   MASGVKVDPSCKNAYDLLHNKHQHSYIIFKIDKNDTAIVVEKVGEKNAPYAEFVEEMKK 59


>L18963-2|AAC14458.1|  165|Caenorhabditis elegans unc-60 protein.
          Length = 165

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +3

Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 434
           +FDF++T    G    SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q
Sbjct: 84  VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142

Query: 435 ATDLSEASQEAVEEKL 482
            +D SE S + +  KL
Sbjct: 143 VSDESEMSHKELLNKL 158



 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 58  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 177
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AF024494-3|AAL02461.1|  165|Caenorhabditis elegans Uncoordinated
           protein 60, isoform a protein.
          Length = 165

 Score = 53.2 bits (122), Expect = 2e-07
 Identities = 31/76 (40%), Positives = 43/76 (56%), Gaps = 1/76 (1%)
 Frame = +3

Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 434
           +FDF++T    G    SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q
Sbjct: 84  VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142

Query: 435 ATDLSEASQEAVEEKL 482
            +D SE S + +  KL
Sbjct: 143 VSDESEMSHKELLNKL 158



 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 58  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 177
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AF024494-1|AAL02462.2|  212|Caenorhabditis elegans Uncoordinated
           protein 60, isoform b protein.
          Length = 212

 Score = 50.8 bits (116), Expect = 1e-06
 Identities = 29/70 (41%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
 Frame = +3

Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSL-VGVQKYIQ 434
           +FDF++T    G    SK  K+  +  CPD A +KKKM+Y+SS  A+K SL  G     Q
Sbjct: 84  VFDFKFTCSRVGAG-TSKMDKIIFLQICPDGASIKKKMVYASSAAAIKTSLGTGKILQFQ 142

Query: 435 ATDLSEASQE 464
            +D SE S +
Sbjct: 143 VSDESEMSHK 152



 Score = 47.6 bits (108), Expect = 1e-05
 Identities = 28/74 (37%), Positives = 47/74 (63%), Gaps = 2/74 (2%)
 Frame = +3

Query: 282 QCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQK--YIQATDLSEA 455
           Q    SE S K+   L++ CPD A V+++MLY+SS  ALK SL G++    +QA+++S+ 
Sbjct: 142 QVSDESEMSHKE---LLNNCPDNAPVRRRMLYASSVRALKASL-GLESLFQVQASEMSDL 197

Query: 456 SQEAVEEKLRATDR 497
            +++V+  L +  R
Sbjct: 198 DEKSVKSDLMSNQR 211



 Score = 31.5 bits (68), Expect = 0.83
 Identities = 15/41 (36%), Positives = 29/41 (70%), Gaps = 1/41 (2%)
 Frame = +1

Query: 58  MASGVTVSDACKTTYEEIKKDKK-HRYVVFYIRDEKQIDVE 177
           M+SGV V    +T+++++ + +K +RY++F I DE ++ VE
Sbjct: 1   MSSGVMVDPDVQTSFQKLSEGRKEYRYIIFKI-DENKVIVE 40


>AC024801-11|AAN84814.2|  138|Caenorhabditis elegans Hypothetical
           protein Y50D7A.10 protein.
          Length = 138

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 16/65 (24%), Positives = 31/65 (47%)
 Frame = +3

Query: 285 CQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQE 464
           C+  S+      + L+ +CP+ +  + +MLY+ S + +      V K  +  D+ E   E
Sbjct: 74  CKKHSDERISYPMLLIYYCPNGSSPELQMLYAGSRNFIVNE-CHVSKNTEIRDIDEIDDE 132

Query: 465 AVEEK 479
            +E K
Sbjct: 133 LLESK 137


>AC024792-3|AAF60684.2|  388|Caenorhabditis elegans Hypothetical
           protein Y48G1A.3 protein.
          Length = 388

 Score = 29.1 bits (62), Expect = 4.4
 Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 216 RGSAEGRYRGMQIGLFDFE-YTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLY 377
           R    G+Y G +    +   + H   G+ E    + +F  S  PD+ K KKK+LY
Sbjct: 141 RPKVNGKYEGAEEYPDELAVFIHSLCGSHEIHPVKIIFRFSKYPDSLKYKKKILY 195


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,950,104
Number of Sequences: 27780
Number of extensions: 369202
Number of successful extensions: 1200
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1198
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2234373834
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)