Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0268.Seq
(886 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4) id... 67 1e-11
At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4) id... 67 1e-11
At4g00680.1 68417.m00093 actin-depolymerizing factor, putative s... 67 2e-11
At1g01750.1 68414.m00094 actin-depolymerizing factor, putative s... 66 4e-11
At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1) id... 65 5e-11
At5g52360.1 68418.m06497 actin-depolymerizing factor, putative s... 64 9e-11
At3g46000.1 68416.m04977 actin-depolymerizing factor, putative (... 64 2e-10
At4g25590.1 68417.m03687 actin-depolymerizing factor, putative s... 63 3e-10
At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3) id... 61 1e-09
At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6) id... 59 3e-09
At3g45990.1 68416.m04976 actin-depolymerizing factor, putative s... 57 1e-08
At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5) id... 56 3e-08
At4g34970.1 68417.m04957 actin-depolymerizing factor, putative s... 53 2e-07
At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3) id... 46 3e-05
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 32 0.44
At3g03290.1 68416.m00326 universal stress protein (USP) family p... 31 0.77
At3g60000.1 68416.m06699 hypothetical protein contains Pfam pro... 29 3.1
At3g01560.1 68416.m00086 proline-rich family protein contains pr... 29 5.4
At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar t... 28 7.2
>At5g59890.2 68418.m07511 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 132
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/75 (38%), Positives = 50/75 (66%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 62 IYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQA 116
Query: 438 TDLSEASQEAVEEKL 482
TD +E + ++ ++
Sbjct: 117 TDPTEMDLDVLKSRV 131
Score = 44.4 bits (100), Expect = 1e-04
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Frame = +1
Query: 70 VTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGGTGE 246
+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L E
Sbjct: 1 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP---ADE 57
Query: 247 CR 252
CR
Sbjct: 58 CR 59
>At5g59890.1 68418.m07510 actin-depolymerizing factor 4 (ADF4)
identical to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}
Length = 139
Score = 67.3 bits (157), Expect = 1e-11
Identities = 29/75 (38%), Positives = 50/75 (66%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 69 IYDFDFV-----TAENCQKSKIFFIAWCPDVAKVRSKMIYASSKDRFKRELDGIQVELQA 123
Query: 438 TDLSEASQEAVEEKL 482
TD +E + ++ ++
Sbjct: 124 TDPTEMDLDVLKSRV 138
Score = 50.0 bits (114), Expect = 2e-06
Identities = 27/65 (41%), Positives = 37/65 (56%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VGE YE F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVIVEKVGEPILTYEDFAASLP--- 61
Query: 238 TGECR 252
ECR
Sbjct: 62 ADECR 66
>At4g00680.1 68417.m00093 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 66.9 bits (156), Expect = 2e-11
Identities = 30/75 (40%), Positives = 51/75 (68%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++T T + +K K+F ++W PDT++V+ KMLY+SS D K+ + G+Q +QA
Sbjct: 69 VYDFDFT-----TEDNCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKREMEGIQVELQA 123
Query: 438 TDLSEASQEAVEEKL 482
TD SE S + ++ +L
Sbjct: 124 TDPSEMSLDIIKGRL 138
Score = 43.6 bits (98), Expect = 2e-04
Identities = 24/66 (36%), Positives = 37/66 (56%), Gaps = 2/66 (3%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 234
ASG+ V+D CK + E+K + +R++VF I DEK Q+ +E +G Y+ F +
Sbjct: 5 ASGMHVNDECKIKFLELKAKRTYRFIVFKI-DEKAQQVQIEKLGNPEETYDDFTSSIP-- 61
Query: 235 GTGECR 252
ECR
Sbjct: 62 -DDECR 66
>At1g01750.1 68414.m00094 actin-depolymerizing factor, putative
strong similarity to SP|P30175 Actin-depolymerizing
factor (ADF) {Lilium longiflorum}; contains Pfam profile
PF00241: Cofilin/tropomyosin-type actin-binding protein
Length = 140
Score = 65.7 bits (153), Expect = 4e-11
Identities = 30/75 (40%), Positives = 51/75 (68%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++D+++T T E +K K+F ++W PDT++V+ KMLY+SS D K+ L G+Q +QA
Sbjct: 69 VYDYDFT-----TPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQA 123
Query: 438 TDLSEASQEAVEEKL 482
TD SE S + ++ ++
Sbjct: 124 TDPSEMSLDIIKGRV 138
Score = 44.8 bits (101), Expect = 8e-05
Identities = 25/66 (37%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEK--QIDVETVGERNAEYEQFLEDLQKG 234
ASG+ VSD CK + E+K + +R++VF I DEK Q+ ++ +G YE F + +
Sbjct: 5 ASGMHVSDECKLKFLELKAKRNYRFIVFKI-DEKAQQVMIDKLGNPEETYEDFTRSIPE- 62
Query: 235 GTGECR 252
ECR
Sbjct: 63 --DECR 66
>At3g46010.1 68416.m04978 actin-depolymerizing factor 1 (ADF1)
identical to SP|Q39250 Actin-depolymerizing factor 1
(ADF-1) (AtADF1) {Arabidopsis thaliana}
Length = 139
Score = 65.3 bits (152), Expect = 5e-11
Identities = 29/65 (44%), Positives = 45/65 (69%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++ T+E +K K+F ++WCPD AKV+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 69 IYDFDFV-----TAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQA 123
Query: 438 TDLSE 452
TD +E
Sbjct: 124 TDPTE 128
Score = 48.4 bits (110), Expect = 6e-06
Identities = 26/65 (40%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++V+ I + +KQ+ VE VG+ YE+F L
Sbjct: 5 ASGMAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLP--- 61
Query: 238 TGECR 252
ECR
Sbjct: 62 ADECR 66
>At5g52360.1 68418.m06497 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 64.5 bits (150), Expect = 9e-11
Identities = 29/74 (39%), Positives = 51/74 (68%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++T T+E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 67 VYDFDFT-----TAENIQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQA 121
Query: 438 TDLSEASQEAVEEK 479
TD SE S + ++ +
Sbjct: 122 TDPSEMSLDIIKSR 135
Score = 44.4 bits (100), Expect = 1e-04
Identities = 23/64 (35%), Positives = 35/64 (54%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGT 240
ASG+ V D CK + E+K + +R+++F I D +Q+ VE +G Y+ F L
Sbjct: 5 ASGMAVEDECKLKFLELKAKRNYRFIIFRI-DGQQVVVEKLGSPQENYDDFTNYLP---P 60
Query: 241 GECR 252
ECR
Sbjct: 61 NECR 64
>At3g46000.1 68416.m04977 actin-depolymerizing factor, putative
(ADF2) strong similarity to SP|Q9ZSK3
Actin-depolymerizing factor 4 (ADF-4) (AtADF4)
{Arabidopsis thaliana}; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 137
Score = 63.7 bits (148), Expect = 2e-10
Identities = 29/74 (39%), Positives = 48/74 (64%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++ T+E +K K+F ++W PDTAKV+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 67 IYDFDFV-----TAENCQKSKIFFIAWSPDTAKVRDKMIYASSKDRFKRELDGIQVELQA 121
Query: 438 TDLSEASQEAVEEK 479
TD +E + + +
Sbjct: 122 TDPTEMGLDVFKSR 135
Score = 44.0 bits (99), Expect = 1e-04
Identities = 22/55 (40%), Positives = 31/55 (56%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDL 225
ASG+ V D CK + E+K + R +V+ I D KQ+ VE +GE Y+ F L
Sbjct: 5 ASGMAVHDDCKLKFMELKAKRTFRTIVYKIED-KQVIVEKLGEPEQSYDDFAASL 58
>At4g25590.1 68417.m03687 actin-depolymerizing factor, putative
strong similarity to pollen specific
actin-depolymerizing factor 2 [Nicotiana tabacum]
GI:22857914; contains Pfam profile PF00241:
Cofilin/tropomyosin-type actin-binding protein
Length = 130
Score = 62.9 bits (146), Expect = 3e-10
Identities = 29/74 (39%), Positives = 49/74 (66%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
+FDF++ T E +K K+F ++W PD+++V+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 60 VFDFDFI-----TDENCQKSKIFFIAWSPDSSRVRMKMVYASSKDRFKRELDGIQVELQA 114
Query: 438 TDLSEASQEAVEEK 479
TD SE S + ++ +
Sbjct: 115 TDPSEMSFDIIKSR 128
Score = 40.3 bits (90), Expect = 0.002
Identities = 20/61 (32%), Positives = 33/61 (54%)
Frame = +1
Query: 70 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVETVGERNAEYEQFLEDLQKGGTGEC 249
+ V D CK + E+K + +R+++F I D +Q+ VE +G + Y+ F L EC
Sbjct: 1 MAVEDECKLKFLELKSKRNYRFIIFRI-DGQQVVVEKLGNPDETYDDFTASLP---ANEC 56
Query: 250 R 252
R
Sbjct: 57 R 57
>At5g59880.1 68418.m07508 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 139
Score = 60.9 bits (141), Expect = 1e-09
Identities = 27/74 (36%), Positives = 47/74 (63%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
+FDF++ +SE + ++F ++W PDTA+V+ KM+Y+SS D K+ L G+Q +QA
Sbjct: 69 IFDFDFV-----SSEGVPRSRIFFVAWSPDTARVRSKMIYASSKDRFKRELDGIQVELQA 123
Query: 438 TDLSEASQEAVEEK 479
TD +E + + +
Sbjct: 124 TDPTEMDLDVFKSR 137
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 238 TGECR 252
ECR
Sbjct: 62 ADECR 66
>At2g31200.1 68415.m03810 actin-depolymerizing factor 6 (ADF6)
identical to SP|Q9ZSK2 Actin-depolymerizing factor 6
(ADF-6) (AtADF6) {Arabidopsis thaliana}
Length = 146
Score = 59.3 bits (137), Expect = 3e-09
Identities = 28/74 (37%), Positives = 45/74 (60%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
++DF++ TSE +K K+F +W P T+ ++ K+LYS+S D L + L G+ IQA
Sbjct: 76 VYDFDFV-----TSENCQKSKIFFFAWSPSTSGIRAKVLYSTSKDQLSRELQGIHYEIQA 130
Query: 438 TDLSEASQEAVEEK 479
TD +E E + E+
Sbjct: 131 TDPTEVDLEVLRER 144
Score = 49.2 bits (112), Expect = 4e-06
Identities = 24/55 (43%), Positives = 34/55 (61%), Gaps = 1/55 (1%)
Frame = +1
Query: 64 SGVTVSDACKTTYEEIKKDKKHRYVVFYI-RDEKQIDVETVGERNAEYEQFLEDL 225
SG+ V+D KTT+ E+++ K HRYVVF I +K++ VE G Y+ FL L
Sbjct: 13 SGMGVADESKTTFLELQRKKTHRYVVFKIDESKKEVVVEKTGNPTESYDDFLASL 67
>At3g45990.1 68416.m04976 actin-depolymerizing factor, putative
similar to SP|Q9ZSK3 Actin-depolymerizing factor 4
(ADF-4) (AtADF4) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 133
Score = 57.2 bits (132), Expect = 1e-08
Identities = 23/57 (40%), Positives = 40/57 (70%)
Frame = +3
Query: 312 KQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQATDLSEASQEAVEEKL 482
++K+ ++W P TAK++KKM+YSS+ D K+ L G+Q ATDL++ S +A+ ++
Sbjct: 76 ERKICFIAWSPSTAKMRKKMIYSSTKDRFKRELDGIQVEFHATDLTDISLDAIRRRI 132
Score = 37.5 bits (83), Expect = 0.012
Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 6/67 (8%)
Frame = +1
Query: 70 VTVSDACKTTYEEIKKDKKHRYVVFYIRDEKQIDVE------TVGERNAEYEQFLEDLQK 231
+ + D CK T+ E+K+ + R +V+ I D Q+ VE GER YE+F L
Sbjct: 1 MVLHDDCKLTFLELKERRTFRSIVYKIEDNMQVIVEKHHYKKMHGEREQSYEEFANSLP- 59
Query: 232 GGTGECR 252
ECR
Sbjct: 60 --ADECR 64
>At2g16700.1 68415.m01916 actin-depolymerizing factor 5 (ADF5)
identical to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}
Length = 143
Score = 56.0 bits (129), Expect = 3e-08
Identities = 23/76 (30%), Positives = 49/76 (64%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
+FDF++ T + +K K+F ++W P+ +K++ K+LY++S D L++ L G+ +QA
Sbjct: 73 VFDFDFV-----TVDNCRKSKIFFIAWSPEASKIRAKILYATSKDGLRRVLEGIHYELQA 127
Query: 438 TDLSEASQEAVEEKLR 485
TD +E + ++++ +
Sbjct: 128 TDPTEMGFDIIQDRAK 143
Score = 41.1 bits (92), Expect = 0.001
Identities = 22/58 (37%), Positives = 37/58 (63%), Gaps = 2/58 (3%)
Frame = +1
Query: 55 KMAS-GVTVSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLED 222
KMA+ G+ V+D C +++ ++K K HRY+VF I ++ +++ V+ VG Y LED
Sbjct: 6 KMATTGMRVTDECTSSFMDMKWKKVHRYIVFKIEEKSRKVTVDKVGGAGESYHD-LED 62
>At4g34970.1 68417.m04957 actin-depolymerizing factor, putative
similar to SP|Q9ZNT3 Actin-depolymerizing factor 5
(ADF-5) (AtADF5) {Arabidopsis thaliana}; contains Pfam
profile PF00241: Cofilin/tropomyosin-type actin-binding
protein
Length = 130
Score = 53.2 bits (122), Expect = 2e-07
Identities = 22/76 (28%), Positives = 48/76 (63%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
+FDF+Y T + + K+F ++W P+ +++++KM+Y++S L++ L GV +QA
Sbjct: 60 VFDFDYV-----TVDNCRMSKIFFITWSPEASRIREKMMYATSKSGLRRVLDGVHYELQA 114
Query: 438 TDLSEASQEAVEEKLR 485
TD +E + ++++ +
Sbjct: 115 TDPTEMGFDKIQDRAK 130
Score = 37.1 bits (82), Expect = 0.015
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Frame = +1
Query: 76 VSDACKTTYEEIKKDKKHRYVVFYIRDE-KQIDVETVGERNAEYEQFLEDL 225
++D CK ++ E+K K HRYVV+ + ++ +++ V+ VG Y+ L
Sbjct: 1 MTDDCKKSFMEMKWKKVHRYVVYKLEEKSRKVTVDKVGAAGESYDDLAASL 51
>At5g59880.2 68418.m07509 actin-depolymerizing factor 3 (ADF3)
identical to SP|Q9ZSK4 Actin-depolymerizing factor 3
(ADF 3) (AtADF3) {Arabidopsis thaliana}
Length = 124
Score = 46.4 bits (105), Expect = 3e-05
Identities = 23/65 (35%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Frame = +1
Query: 61 ASGVTVSDACKTTYEEIKKDKKHRYVVFYIRD-EKQIDVETVGERNAEYEQFLEDLQKGG 237
ASG+ V D CK + E+K + HR++++ I + +KQ+ VE +GE +E L
Sbjct: 5 ASGMAVHDDCKLKFMELKTKRTHRFIIYKIEELQKQVIVEKIGEPGQTHEDLAASLP--- 61
Query: 238 TGECR 252
ECR
Sbjct: 62 ADECR 66
Score = 28.7 bits (61), Expect = 5.4
Identities = 19/74 (25%), Positives = 36/74 (48%)
Frame = +3
Query: 258 LFDFEYTHQCQGTSEASKKQKLFLMSWCPDTAKVKKKMLYSSSFDALKKSLVGVQKYIQA 437
+FDF++ +SE + ++F ++W PDTA+ + L G+Q +QA
Sbjct: 69 IFDFDFV-----SSEGVPRSRIFFVAWSPDTAR---------------RELDGIQVELQA 108
Query: 438 TDLSEASQEAVEEK 479
TD +E + + +
Sbjct: 109 TDPTEMDLDVFKSR 122
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 32.3 bits (70), Expect = 0.44
Identities = 16/52 (30%), Positives = 25/52 (48%)
Frame = +2
Query: 422 EVHPSDRPLGSVSGGRRREAPRHRSPINSFTHELATKPNPLSDTPALTTRGH 577
++ P P+ + +G R P + + NS H+L P P A+TT GH
Sbjct: 62 QLRPPSIPVTTNTGHRHCRPPSNPATTNSGHHQLRPPPPPPPPLSAITTTGH 113
>At3g03290.1 68416.m00326 universal stress protein (USP) family
protein contains Pfam profile: PF00582 universal stress
protein family
Length = 274
Score = 31.5 bits (68), Expect = 0.77
Identities = 12/24 (50%), Positives = 18/24 (75%)
Frame = +1
Query: 175 ETVGERNAEYEQFLEDLQKGGTGE 246
ET G+ +EYE+F E+ ++GG GE
Sbjct: 45 ETDGDSTSEYEEFEEEKERGGEGE 68
>At3g60000.1 68416.m06699 hypothetical protein contains Pfam
profile: PF04484 family of unknown function (DUF566)
Length = 451
Score = 29.5 bits (63), Expect = 3.1
Identities = 19/55 (34%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Frame = +2
Query: 413 RSSEV--HPSDRPLGSVSGGRRREAPRHRSPINSFTHELATKPNPLSDTPALTTR 571
RSSE D P ++S R+ P H P+N +H L T P P+ P +R
Sbjct: 88 RSSETAARSLDSPF-TLSQSRKSSKPSHLKPLNENSHRLET-PTPMVPPPPSRSR 140
>At3g01560.1 68416.m00086 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 511
Score = 28.7 bits (61), Expect = 5.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = -1
Query: 694 AGGGGTYPRGLTRGPTTSKINHINTIRFP 608
+GGG + PR +R P I+ + T+ FP
Sbjct: 441 SGGGSSSPRSESRAPIDDVIDRVTTMGFP 469
>At5g55310.1 68418.m06893 DNA topoisomerase I, putative similar to
Swiss-Prot:P30181 DNA topoisomerase I [Arabidopsis
thaliana]
Length = 917
Score = 28.3 bits (60), Expect = 7.2
Identities = 25/107 (23%), Positives = 42/107 (39%), Gaps = 3/107 (2%)
Frame = +2
Query: 314 TEALPDVVVPGHRQG*E---EDVVL*LVRRSEKVPCRSSEVHPSDRPLGSVSGGRRREAP 484
TEA VVP G E ED + + +R+ ++ P + + + + G + +P
Sbjct: 3 TEAFVKPVVPNGHDGYEDEDEDDIPLVFKRNSNTAATTNRPSPINNAMRNSAIGSTKSSP 62
Query: 485 RHRSPINSFTHELATKPNPLSDTPALTTRGHDTTSRLVLLQRKTNSI 625
RSP+ S ++ PAL + S L R S+
Sbjct: 63 PMRSPLTSPNRSASSSTRSSMMKPALPSSSSVQRSTLKSPLRDDRSV 109
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,987,063
Number of Sequences: 28952
Number of extensions: 342639
Number of successful extensions: 1097
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1092
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2071520424
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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