Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0267.Seq
(955 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 145 7e-36
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 47 3e-06
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 42 1e-04
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 35 0.015
SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subu... 33 0.078
SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces po... 30 0.55
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 30 0.55
SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit... 29 0.97
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe... 28 1.7
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 2.9
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki... 27 2.9
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 27 3.9
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 27 5.1
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||... 26 6.8
SPCC1827.05c |||nucleolar RNA-binding protein NIFK |Schizosaccha... 26 9.0
SPAC1002.12c |||succinate-semialdehyde dehydrogenase |Schizosacc... 26 9.0
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 145 bits (352), Expect = 7e-36
Identities = 64/86 (74%), Positives = 76/86 (88%)
Frame = +1
Query: 256 YNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGD 435
YN+PEQLFADAG+M+IEHADF+GIERL LVTGGEI STFD P+ VKLGHCK IEE++IG+
Sbjct: 293 YNWPEQLFADAGIMSIEHADFDGIERLSLVTGGEIASTFDHPELVKLGHCKKIEEIIIGE 352
Query: 436 ESLIRFSGVALGSACTIVIRGATQQL 513
+ +I+FSGV G ACTIV+RGAT QL
Sbjct: 353 DKMIKFSGVEAGEACTIVLRGATHQL 378
Score = 121 bits (291), Expect = 2e-28
Identities = 57/84 (67%), Positives = 69/84 (82%)
Frame = +2
Query: 2 SXLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAE 181
S LDEGF+LNK +GV+ PK +ENANILIANT MDTDK+KVFG+ ++VD+ K+AELE AE
Sbjct: 208 SFLDEGFILNKTIGVNCPKVMENANILIANTAMDTDKVKVFGARVRVDTTGKLAELERAE 267
Query: 182 KEKMKDKVNKILAHKCNVFINRQL 253
+EKMK KV KI +H N FINRQL
Sbjct: 268 REKMKAKVEKIKSHNINCFINRQL 291
Score = 39.5 bits (88), Expect = 7e-04
Identities = 23/85 (27%), Positives = 39/85 (45%)
Frame = +3
Query: 510 VIDEAERSLHDALCVLAATVKEPKSYVDEGLVKC*WXXXXXXXXXXXXXXXXXXXXXXXX 689
++DE+ER++HDAL VL+ TV E + + G +
Sbjct: 378 LLDESERAIHDALAVLSQTVAESRVTLGGGCAEMLMAKAVEEAATHEPGKKAVAVSAFAK 437
Query: 690 XXXXXXSAVADNAXYDHSDLIARLR 764
+ +ADNA +D S+L+A+L+
Sbjct: 438 ALSQLPTILADNAGFDSSELVAQLK 462
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 47.2 bits (107), Expect = 3e-06
Identities = 24/80 (30%), Positives = 35/80 (43%)
Frame = +1
Query: 271 QLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGDESLIR 450
Q FAD + + + R+ GG I ST + ++ LG C EE IG +
Sbjct: 306 QYFADRDIFCAGRVAADDLNRVVQAVGGSIQSTCSNIEEKHLGTCDTFEERQIGGDRFNL 365
Query: 451 FSGVALGSACTIVIRGATQQ 510
F G CT+++RG Q
Sbjct: 366 FEGCPKAKTCTLILRGGADQ 385
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 42.3 bits (95), Expect = 1e-04
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +1
Query: 292 VMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGDESLIRFSGVA-L 468
+M I+ + + +E + TG + ++ +S + KLGH L+EE E +++FSGV
Sbjct: 311 IMVIKDIERDEVEFICKSTGCKPIADIESFAEDKLGHADLVEETSSSGEKIVKFSGVKNA 370
Query: 469 GSACTIVIRGA 501
G +I+ RGA
Sbjct: 371 GKTVSILCRGA 381
Score = 35.1 bits (77), Expect = 0.015
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +3
Query: 513 IDEAERSLHDALCVLAATVKE 575
++EAERSLHDALCV+ VK+
Sbjct: 386 LEEAERSLHDALCVIRCLVKQ 406
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 35.1 bits (77), Expect = 0.015
Identities = 22/75 (29%), Positives = 34/75 (45%)
Frame = +1
Query: 274 LFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGDESLIRF 453
+ A G+MA+ A +ERL L GG ++ D + LG + E +G+E
Sbjct: 303 VLAKNGIMALRRAKRRNMERLQLACGGVAQNSVDDLNPEVLGWAGSVYERTLGEEKYTFV 362
Query: 454 SGVALGSACTIVIRG 498
V + TI+I G
Sbjct: 363 EDVKDPKSATILIHG 377
Score = 28.7 bits (61), Expect = 1.3
Identities = 18/61 (29%), Positives = 34/61 (55%)
Frame = +2
Query: 53 PKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAHKCN 232
PK+V+NA ILI N ++ +K ++ S + + L +E++ + +K+ KI+ K
Sbjct: 220 PKQVKNAYILILNVSLEYEKSEI-NSGFFYSTSEQRERLVESERKFVDNKLRKIVELKKE 278
Query: 233 V 235
V
Sbjct: 279 V 279
Score = 27.1 bits (57), Expect = 3.9
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = -3
Query: 575 FFYSSSKHAKRIME*TLSFVDN 510
FFYS+S+ +R++E FVDN
Sbjct: 246 FFYSTSEQRERLVESERKFVDN 267
>SPAC1420.02c |cct5||chaperonin-containing T-complex epsilon subunit
Cct5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 546
Score = 32.7 bits (71), Expect = 0.078
Identities = 11/22 (50%), Positives = 19/22 (86%)
Frame = +3
Query: 510 VIDEAERSLHDALCVLAATVKE 575
++DEA+R+LHDALCV+ +++
Sbjct: 396 IVDEAKRALHDALCVVRNLIRD 417
>SPAC32A11.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 851
Score = 29.9 bits (64), Expect = 0.55
Identities = 19/67 (28%), Positives = 31/67 (46%)
Frame = +2
Query: 44 VHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKILAH 223
+H+ K E T K+KV+G + ++I+ L + KEK KD ++ H
Sbjct: 616 IHKEAKSEIEKDSSKPTEDQESKLKVYGRV----AYSRISNLHKSSKEKGKDSQVRVALH 671
Query: 224 KCNVFIN 244
K N +N
Sbjct: 672 KENTALN 678
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 29.9 bits (64), Expect = 0.55
Identities = 18/81 (22%), Positives = 37/81 (45%), Gaps = 6/81 (7%)
Frame = +1
Query: 283 DAGVMAIEHADFEGIERLGLVTGGEIVSTF------DSPDKVKLGHCKLIEEVLIGDESL 444
+AG MA+ E + R+ +G ++S+ ++ + LG + + + D+
Sbjct: 307 EAGAMAVRRCKKEDLRRIAKASGATLLSSLSNLEGEETFESSYLGSAEEVVQEKFSDDEC 366
Query: 445 IRFSGVALGSACTIVIRGATQ 507
I G S+ +IV+RG +
Sbjct: 367 ILVKGTKAYSSASIVLRGPNE 387
Score = 28.7 bits (61), Expect = 1.3
Identities = 13/32 (40%), Positives = 20/32 (62%)
Frame = +3
Query: 513 IDEAERSLHDALCVLAATVKEPKSYVDEGLVK 608
+DE ERS+HD+L V+ T++ K G V+
Sbjct: 390 LDEMERSMHDSLSVVKRTLESGKVVPGGGAVE 421
>SPBC1A4.08c |cct3||chaperonin-containing T-complex gamma subunit
Cct3|Schizosaccharomyces pombe|chr 2|||Manual
Length = 528
Score = 29.1 bits (62), Expect = 0.97
Identities = 19/77 (24%), Positives = 33/77 (42%), Gaps = 1/77 (1%)
Frame = +1
Query: 286 AGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGH-CKLIEEVLIGDESLIRFSGV 462
A + A+ R+ G IV+ + + +G C L +GDE +G
Sbjct: 305 ANITALRRTRKSDNNRIARACGANIVNRLEDLREKDVGTGCGLFYIDKLGDEYYTFLTGC 364
Query: 463 ALGSACTIVIRGATQQL 513
ACTI++RG ++ +
Sbjct: 365 KNPKACTILLRGPSKDI 381
>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 871
Score = 28.3 bits (60), Expect = 1.7
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
Frame = -3
Query: 497 PRITIVQAEPNATPEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDT---ISPPVTKPSLS 327
P+IT + E ++ R+ S+ + SS S T S ES D S PVT +S
Sbjct: 540 PKITTIDGESPSSISSRLPSSNLEQGSS-----SSVTKSPESMPDPSAKASSPVTSKGVS 594
Query: 326 IPSKSACSIAITPAS 282
I KSA + TP S
Sbjct: 595 INEKSAVNNYATPLS 609
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.5 bits (58), Expect = 2.9
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = -3
Query: 500 APRITIVQAEPNATPEKRIKLSSPIRTSSINLQ*PSFTL-SGESNVDTIS--PPVTKPSL 330
AP + I + P S+P + + + PS SG V S PPV KPS+
Sbjct: 1040 APPVPIPTSTPPVPKSSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSV 1099
Query: 329 SIPSKSACSIAITPASA 279
+ P S+A+ P A
Sbjct: 1100 AAPPVPKPSVAVPPVPA 1116
>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1436
Score = 27.5 bits (58), Expect = 2.9
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = -3
Query: 458 PEKRIKLSSPIRTSSINLQ*PSFTLSGESNVDTISPPVTKPSLSIPSKSA 309
P + + +S+P+ +I+ ++ +S + + PP + S+ IP K+A
Sbjct: 100 PAEALTISTPVDPINIDELDRAYAVSPSDTSNLLHPPTSSSSIPIPIKNA 149
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 27.1 bits (57), Expect = 3.9
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 23 LLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGST 133
L N P K E N++ AN + DK + FGS+
Sbjct: 108 LYNHMSSAPSPNKKEETNVVHANEDISLDKRQSFGSS 144
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 26.6 bits (56), Expect = 5.1
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = -3
Query: 443 KLSSPIRTSSINLQ*PSFTLSGESNV-DTISPPVTKPSLSIPSKSACS 303
K S + +S ++ TLS S V T S PVT S S+ KSA S
Sbjct: 194 KASKKLTSSPTSVASKKATLSSVSKVASTSSLPVTSVSASVDPKSAAS 241
>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 3227
Score = 26.2 bits (55), Expect = 6.8
Identities = 12/37 (32%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 721 TMLATTILISLLD-SEXHQFSXGGPRNXFRPXSESYY 828
+++ + +L L+D +E QFS P + F P ++S Y
Sbjct: 1552 SVIVSFLLDELMDLTETRQFSDRSPNSEFTPENDSLY 1588
>SPCC1827.05c |||nucleolar RNA-binding protein NIFK
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 276
Score = 25.8 bits (54), Expect = 9.0
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +2
Query: 110 KIKVFGSTIKVDSMAKIAELEVAEKEKMKDKVNKIL-AHK 226
K+K G T++ D A VA K+ K K K+L AHK
Sbjct: 237 KLKELGITLESDVSHPKAASPVASKKSSKKKNKKVLAAHK 276
>SPAC1002.12c |||succinate-semialdehyde dehydrogenase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 9.0
Identities = 12/30 (40%), Positives = 18/30 (60%)
Frame = +1
Query: 442 LIRFSGVALGSACTIVIRGATQQLSTKLSV 531
+ R G AL + CT+VIR A + T L++
Sbjct: 176 ITRKVGAALAAGCTVVIRPAAETPFTALAL 205
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,284,549
Number of Sequences: 5004
Number of extensions: 59645
Number of successful extensions: 228
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 199
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 227
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 487313384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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