Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0267.Seq
         (955 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.       26   1.9  
AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.          26   1.9  
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    25   2.6  
AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl s...    24   5.9  
AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.      24   7.8  

>AY578808-1|AAT07313.1|  458|Anopheles gambiae saxophone protein.
          Length = 458

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/37 (29%), Positives = 18/37 (48%), Gaps = 2/37 (5%)
 Frame = +3

Query: 321 RYRKAWLGHWRGN--CVNI*LTRQSETWSLQIDRRGS 425
           RY + W G W G    V I  +R  ++W  + +  G+
Sbjct: 161 RYGEVWRGIWHGESVAVKIFFSRDEDSWKRETEIYGT 197


>AY578798-1|AAT07303.1|  356|Anopheles gambiae baboon protein.
          Length = 356

 Score = 25.8 bits (54), Expect = 1.9
 Identities = 11/33 (33%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = +3

Query: 321 RYRKAWLGHWRGN--CVNI*LTRQSETWSLQID 413
           R+ + W G WRG    V I  +R+  +WS + +
Sbjct: 69  RFGEVWRGRWRGENVAVKIFSSREECSWSREAE 101


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = -3

Query: 365 DTISPPVTKPSLSIPSKSACSIAITPASANN 273
           D ++P + KPS+S PS++  S   +  +A N
Sbjct: 142 DKLTPVLAKPSVSQPSRTHTSTNASSLNATN 172


>AJ439353-1|CAD27923.1| 1127|Anopheles gambiae putative Na-K-Cl
           symporter protein.
          Length = 1127

 Score = 24.2 bits (50), Expect = 5.9
 Identities = 13/26 (50%), Positives = 16/26 (61%)
 Frame = -3

Query: 359 ISPPVTKPSLSIPSKSACSIAITPAS 282
           IS  +  PS SIP  +  +IAIT AS
Sbjct: 417 ISGDLKDPSSSIPKGTILAIAITSAS 442


>AY578811-1|AAT07316.1|  565|Anopheles gambiae thickveins protein.
          Length = 565

 Score = 23.8 bits (49), Expect = 7.8
 Identities = 10/28 (35%), Positives = 13/28 (46%), Gaps = 2/28 (7%)
 Frame = +3

Query: 321 RYRKAWLGHWRGN--CVNI*LTRQSETW 398
           RY + WL  WR     V I  T +  +W
Sbjct: 269 RYGEVWLAKWRDEKVAVKIFFTTEESSW 296


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 843,962
Number of Sequences: 2352
Number of extensions: 16270
Number of successful extensions: 23
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 563,979
effective HSP length: 64
effective length of database: 413,451
effective search space used: 104603103
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)