Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0267.Seq
         (955 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...    22   9.4  
AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor pr...    22   9.4  
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...    22   9.4  
AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor pr...    22   9.4  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 330 KAWLGHWRGNCVNI 371
           + +L +WRGN  N+
Sbjct: 67  QGFLSYWRGNLANV 80


>AY340960-1|AAQ16586.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 395 SFTLSGESNVDTIS 354
           S ++ GESNVD +S
Sbjct: 27  SISVKGESNVDVVS 40


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +3

Query: 330 KAWLGHWRGNCVNI 371
           + +L +WRGN  N+
Sbjct: 67  QGFLSYWRGNLANV 80


>AY055108-1|AAL15544.1|   78|Apis mellifera apisimin precursor
           protein.
          Length = 78

 Score = 21.8 bits (44), Expect = 9.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 395 SFTLSGESNVDTIS 354
           S ++ GESNVD +S
Sbjct: 27  SISVKGESNVDVVS 40


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 219,339
Number of Sequences: 438
Number of extensions: 3949
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 31323201
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)