Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0267.Seq
(955 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g20890.1 68418.m02481 chaperonin, putative similar to SWISS-P... 145 4e-35
At3g11830.1 68416.m01450 chaperonin, putative similar to SWISS-P... 48 1e-05
At5g16070.1 68418.m01878 chaperonin, putative similar to SWISS-P... 46 4e-05
At3g02530.1 68416.m00241 chaperonin, putative similar to SWISS-P... 45 6e-05
At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit / TCP... 41 0.001
At3g18190.1 68416.m02314 chaperonin, putative similar to SWISS-P... 40 0.002
At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit, pu... 38 0.010
At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit, pu... 38 0.010
At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kina... 36 0.040
At4g38910.1 68417.m05514 expressed protein 31 0.85
At2g45000.1 68415.m05603 expressed protein contains Pfam profile... 30 2.0
At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR... 29 3.4
At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase... 29 4.5
At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kina... 29 4.5
At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-rel... 29 4.5
At1g48090.2 68414.m05363 C2 domain-containing protein contains P... 29 6.0
At1g48090.1 68414.m05362 C2 domain-containing protein contains P... 29 6.0
At3g63150.1 68416.m07092 GTP-binding protein-related low similar... 28 7.9
At1g29450.1 68414.m03603 auxin-responsive protein, putative simi... 28 7.9
At1g19700.1 68414.m02457 homeobox-leucine zipper family protein ... 28 7.9
At1g05800.1 68414.m00606 lipase class 3 family protein similar t... 28 7.9
>At5g20890.1 68418.m02481 chaperonin, putative similar to
SWISS-PROT:P78371- T-complex protein 1, beta subunit
(TCP-1-beta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 527
Score = 145 bits (351), Expect = 4e-35
Identities = 62/86 (72%), Positives = 77/86 (89%)
Frame = +1
Query: 256 YNYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGD 435
YN+PE+LFADAG++AIEHADFEGIERLGLVTGGEI STFD+P+ VKLGHCKLIEE++IG+
Sbjct: 292 YNFPEELFADAGILAIEHADFEGIERLGLVTGGEIASTFDNPESVKLGHCKLIEEIMIGE 351
Query: 436 ESLIRFSGVALGSACTIVIRGATQQL 513
+ LI FSG +G AC+IV+RGA+ +
Sbjct: 352 DKLIHFSGCEMGQACSIVLRGASHHV 377
Score = 131 bits (316), Expect = 8e-31
Identities = 56/84 (66%), Positives = 73/84 (86%)
Frame = +2
Query: 2 SXLDEGFLLNKKVGVHQPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAE 181
S LDEGF+L+KK+G+ QPK++ENANIL+ANT MDTDK+K++G+ ++VDSM K+AE+E AE
Sbjct: 207 SFLDEGFILDKKIGIGQPKRIENANILVANTAMDTDKVKIYGARVRVDSMTKVAEIEGAE 266
Query: 182 KEKMKDKVNKILAHKCNVFINRQL 253
KEKMKDKV KI+ H N F+NRQL
Sbjct: 267 KEKMKDKVKKIIGHGINCFVNRQL 290
Score = 45.6 bits (103), Expect = 5e-05
Identities = 27/85 (31%), Positives = 39/85 (45%)
Frame = +3
Query: 510 VIDEAERSLHDALCVLAATVKEPKSYVDEGLVKC*WXXXXXXXXXXXXXXXXXXXXXXXX 689
V+DEAERSLHDALCVL+ TV + + + G +
Sbjct: 377 VLDEAERSLHDALCVLSQTVNDTRVLLGGGWPEMVMAKEVDELARKTAGKKSHAIEAFSR 436
Query: 690 XXXXXXSAVADNAXYDHSDLIARLR 764
+ +ADNA D ++L+A+LR
Sbjct: 437 ALVAIPTTIADNAGLDSAELVAQLR 461
>At3g11830.1 68416.m01450 chaperonin, putative similar to
SWISS-PROT:P80313 T-complex protein 1, eta subunit
(TCP-1-eta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 557
Score = 47.6 bits (108), Expect = 1e-05
Identities = 25/80 (31%), Positives = 37/80 (46%)
Frame = +1
Query: 271 QLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGDESLIR 450
Q FAD + E + R+ GG + ++ ++ LG C++ EE +G E
Sbjct: 304 QYFADRDIFCAGRVAEEDLNRVAAAAGGTVQTSVNNIIDEVLGTCEIFEEKQVGGERFNI 363
Query: 451 FSGVALGSACTIVIRGATQQ 510
FSG G TIV+RG Q
Sbjct: 364 FSGCPSGRTATIVLRGGADQ 383
Score = 29.9 bits (64), Expect = 2.6
Identities = 21/92 (22%), Positives = 33/92 (35%)
Frame = +3
Query: 513 IDEAERSLHDALCVLAATVKEPKSYVDEGLVKC*WXXXXXXXXXXXXXXXXXXXXXXXXX 692
I+EAERSLHDA+ ++ VK G +
Sbjct: 385 IEEAERSLHDAIMIVRRAVKNSTVVPGGGAIDMEISKYLRQHSRTIAGKSQLFINSYAKA 444
Query: 693 XXXXXSAVADNAXYDHSDLIARLRXPSILXXG 788
+ DNA +D +D++ +LR + G
Sbjct: 445 LEVIPRQLCDNAGFDATDVLNKLRQKHAMQSG 476
>At5g16070.1 68418.m01878 chaperonin, putative similar to
SWISS-PROT:P80317 T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 46.0 bits (104), Expect = 4e-05
Identities = 25/75 (33%), Positives = 39/75 (52%)
Frame = +1
Query: 274 LFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGDESLIRF 453
L A G++ + A +ERL L GGE V++ D LG L+ E ++G+E
Sbjct: 306 LLAREGIIGLRRAKRRNMERLVLACGGEAVNSVDDLTPESLGWAGLVYEHVLGEEKYTFV 365
Query: 454 SGVALGSACTIVIRG 498
V ++CTI+I+G
Sbjct: 366 EQVKNPNSCTILIKG 380
>At3g02530.1 68416.m00241 chaperonin, putative similar to
SWISS-PROT:P80317- T-complex protein 1, zeta subunit
(TCP-1-zeta) [Mus musculus]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 535
Score = 45.2 bits (102), Expect = 6e-05
Identities = 26/75 (34%), Positives = 39/75 (52%)
Frame = +1
Query: 274 LFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGDESLIRF 453
L A G++A+ A +ERL L GGE V++ D LG L+ E ++G+E
Sbjct: 307 LLAREGIIALRRAKRRNMERLVLACGGEAVNSVDDLTPDCLGWAGLVYEHVLGEEKYTFV 366
Query: 454 SGVALGSACTIVIRG 498
V +CTI+I+G
Sbjct: 367 EQVKNPHSCTILIKG 381
>At3g20050.1 68416.m02536 T-complex protein 1 alpha subunit /
TCP-1-alpha / chaperonin (CCT1) identical to
SWISS-PROT:P28769- T-complex protein 1, alpha subunit
(TCP-1-alpha) [Arabidopsis thaliana]
Length = 545
Score = 41.1 bits (92), Expect = 0.001
Identities = 23/85 (27%), Positives = 40/85 (47%), Gaps = 6/85 (7%)
Frame = +1
Query: 277 FADAGVMAIEHADFEGIERLGLVTGGEIVSTF------DSPDKVKLGHCKLIEEVLIGDE 438
F +AG +A+ E + + TG +V+TF ++ D LG + E I D+
Sbjct: 303 FVEAGAIAVRRVRKEDMRHVAKATGATLVTTFADMEGEETFDPAHLGSADEVVEERIADD 362
Query: 439 SLIRFSGVALGSACTIVIRGATQQL 513
+I G SA ++++RGA +
Sbjct: 363 DVILIKGTKTSSAVSLILRGANDYM 387
Score = 32.3 bits (70), Expect = 0.49
Identities = 21/85 (24%), Positives = 34/85 (40%)
Frame = +3
Query: 510 VIDEAERSLHDALCVLAATVKEPKSYVDEGLVKC*WXXXXXXXXXXXXXXXXXXXXXXXX 689
++DE ER+LHDALC++ T++ G V+
Sbjct: 387 MLDEMERALHDALCIVKRTLESNTVVAGGGAVESALSVYLEHLATTLGSREQLAIAEFAD 446
Query: 690 XXXXXXSAVADNAXYDHSDLIARLR 764
+A NA D ++L+A+LR
Sbjct: 447 ALLIIPKVLAVNAAKDATELVAKLR 471
>At3g18190.1 68416.m02314 chaperonin, putative similar to
SWISS-PROT:P50991- T-complex protein 1, delta subunit
(TCP-1-delta) [Homo sapiens]; contains Pfam:PF00118
domain, TCP-1/cpn60 chaperonin family
Length = 536
Score = 39.9 bits (89), Expect = 0.002
Identities = 20/77 (25%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 280 ADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGDESLIRFSG 459
A A +M I+ + + IE + ++ + KLGH L+EE +GD +++ +G
Sbjct: 316 AKAKIMVIKDVERDEIEFVTKTLNCLPIANIEHFRAEKLGHADLVEEASLGDGKILKITG 375
Query: 460 VA-LGSACTIVIRGATQ 507
+ +G ++++RG+ Q
Sbjct: 376 IKDMGRTTSVLVRGSNQ 392
Score = 35.5 bits (78), Expect = 0.052
Identities = 15/22 (68%), Positives = 18/22 (81%)
Frame = +3
Query: 510 VIDEAERSLHDALCVLAATVKE 575
V+DEAERSLHDALCV+ V +
Sbjct: 394 VLDEAERSLHDALCVVRCLVSK 415
>At1g24510.2 68414.m03085 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 459
Score = 37.9 bits (84), Expect = 0.010
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 325 IERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIG--DESLIRFSGVALGSACTIVIRG 498
+E + + TGG IV F KLG ++ E G E ++ A A T+ IRG
Sbjct: 250 LELIAIATGGRIVPRFQELTPEKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRG 309
Query: 499 ATQQL--STKLSVHSMMRFACLLLL*KNRS 582
+ + TK S+H + A L+ +N+S
Sbjct: 310 GNKMMIEETKRSIHDALCVARNLI--RNKS 337
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 510 VIDEAERSLHDALCVLAATVKEPKSYVDEG 599
+I+E +RS+HDALCV ++ KS V G
Sbjct: 314 MIEETKRSIHDALCVARNLIRN-KSIVYGG 342
>At1g24510.1 68414.m03086 T-complex protein 1 epsilon subunit,
putative / TCP-1-epsilon, putative / chaperonin,
putative identical to SWISS-PROT:O04450- T-complex
protein 1, epsilon subunit (TCP-1-epsilon) [Arabidopsis
thaliana]; strong similarity to SP|P54411 T-complex
protein 1, epsilon subunit (TCP-1-epsilon) (CCT-epsilon)
(TCP-K36) {Avena sativa}; contains Pfam:PF00118 domain,
TCP-1/cpn60 chaperonin family
Length = 535
Score = 37.9 bits (84), Expect = 0.010
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 4/90 (4%)
Frame = +1
Query: 325 IERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIG--DESLIRFSGVALGSACTIVIRG 498
+E + + TGG IV F KLG ++ E G E ++ A A T+ IRG
Sbjct: 326 LELIAIATGGRIVPRFQELTPEKLGKAGVVREKSFGTTKERMLYIEHCANSKAVTVFIRG 385
Query: 499 ATQQL--STKLSVHSMMRFACLLLL*KNRS 582
+ + TK S+H + A L+ +N+S
Sbjct: 386 GNKMMIEETKRSIHDALCVARNLI--RNKS 413
Score = 28.7 bits (61), Expect = 6.0
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = +3
Query: 510 VIDEAERSLHDALCVLAATVKEPKSYVDEG 599
+I+E +RS+HDALCV ++ KS V G
Sbjct: 390 MIEETKRSIHDALCVARNLIRN-KSIVYGG 418
>At1g71010.1 68414.m08192 phosphatidylinositol-4-phosphate 5-kinase
family protein low similarity to phosphatidylinositol
3,5-kinase [Candida albicans] GI:14571648; contains Pfam
profile PF01504: Phosphatidylinositol-4-phosphate
5-Kinase
Length = 1648
Score = 35.9 bits (79), Expect = 0.040
Identities = 25/97 (25%), Positives = 46/97 (47%), Gaps = 13/97 (13%)
Frame = +1
Query: 259 NYPEQLFADAGVMAIEHADFEGIERLGLVTGGEIVSTFDSPDKVKLGHCKLI--EEVL-- 426
+Y +Q + + + + ++R+ TG + + DS +LGHC+L E VL
Sbjct: 476 SYAQQYLLEKEISLVLNVKRSLLDRIARCTGAVLCPSLDSISTARLGHCELFRTERVLEQ 535
Query: 427 --IGDES-------LIRFSGVALGSACTIVIRGATQQ 510
G++S L+ F G CT+V+RG+ ++
Sbjct: 536 HEAGNQSNRKPSRTLMYFEGCPRRLGCTVVLRGSCRE 572
>At4g38910.1 68417.m05514 expressed protein
Length = 445
Score = 31.5 bits (68), Expect = 0.85
Identities = 16/70 (22%), Positives = 37/70 (52%)
Frame = +2
Query: 149 MAKIAELEVAEKEKMKDKVNKILAHKCNVFINRQLNTTTQSSCLLMLE*WQLSMLISKVS 328
++++A+L + K +MKD+V ++ + + RQ++++T L + + S ++
Sbjct: 265 LSRLADLTIRIKSRMKDEVRLVIVFTVDSSVKRQISSST---VLTWFCCFIFATFFSGIA 321
Query: 329 KGLAWSLEGK 358
W+L GK
Sbjct: 322 FAFEWTLNGK 331
>At2g45000.1 68415.m05603 expressed protein contains Pfam profile:
PF05064 Nsp1-like C-terminal region
Length = 739
Score = 30.3 bits (65), Expect = 2.0
Identities = 18/61 (29%), Positives = 30/61 (49%), Gaps = 5/61 (8%)
Frame = -3
Query: 443 KLSSPIRTSSINLQ*PSFTLSGESNVDTISP-----PVTKPSLSIPSKSACSIAITPASA 279
K S+P +S P+F+ S S+ T +P T+ +L +PS S S A+ P +
Sbjct: 471 KTSTPASSSQPQTTSPAFSFSLPSSTSTTAPATSSATTTQTTLVVPSSSGTSTAVAPVAG 530
Query: 278 N 276
+
Sbjct: 531 S 531
>At4g36140.1 68417.m05144 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1607
Score = 29.5 bits (63), Expect = 3.4
Identities = 15/47 (31%), Positives = 22/47 (46%)
Frame = -2
Query: 360 NFPSSDQAKPFDTFEISMLNCHYSSISKQLLWVVVLSCLLMKTLHLC 220
N+P + FD + LN YS + K LW S ++K + LC
Sbjct: 996 NYPLQSLPQDFDPCHLVELNLSYSQLQK--LWAGTKSLEMLKVVKLC 1040
>At5g48300.1 68418.m05966 glucose-1-phosphate adenylyltransferase
small subunit 1 (APS1) / ADP-glucose pyrophosphorylase
(ADG1) identical to SP|P55228
Length = 520
Score = 29.1 bits (62), Expect = 4.5
Identities = 17/47 (36%), Positives = 26/47 (55%)
Frame = +2
Query: 50 QPKKVENANILIANTPMDTDKIKVFGSTIKVDSMAKIAELEVAEKEK 190
Q + +A+I +A PMD + FG +K+D +I +E AEK K
Sbjct: 226 QAHRETDADITVAALPMDEQRATAFG-LMKIDEEGRI--IEFAEKPK 269
>At4g33240.1 68417.m04731 phosphatidylinositol-4-phosphate 5-kinase
family protein similar to SP|Q9Z1T6 FYVE
finger-containing phosphoinositide kinase (EC 2.7.1.68)
(1- phosphatidylinositol-4-phosphate kinase) (PIP5K)
(PtdIns(4)P-5-kinase) {Mus musculus}; contains Pfam
profiles PF01504: Phosphatidylinositol-4-phosphate
5-Kinase, PF01363: FYVE zinc finger, PF00118:
TCP-1/cpn60 chaperonin family
Length = 1756
Score = 29.1 bits (62), Expect = 4.5
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 13/72 (18%)
Frame = +1
Query: 325 IERLGLVTGGEIVSTFDSPDKVKLGHCKLIE-----EVLIGD--------ESLIRFSGVA 465
+ER+ TG +IV + D KLG+C L E + ++L+ F G
Sbjct: 541 LERISRCTGAQIVPSIDQLTSPKLGYCDLFHVEKFVETHVSPCQVAKKMAKTLMFFDGCP 600
Query: 466 LGSACTIVIRGA 501
CTI+++GA
Sbjct: 601 KPLGCTILLKGA 612
>At1g03060.1 68414.m00280 WD-40 repeat family protein / beige-related
similar to BEIGE (GI:3928547) [Rattus norvegicus];
Similar to gb|U70015 lysosomal trafficking regulator from
Mus musculus and contains 2 Pfam PF00400 WD-40, G-beta
repeats. ESTs gb|T43386 and gb|AA395236 come from this
gene
Length = 3601
Score = 29.1 bits (62), Expect = 4.5
Identities = 14/42 (33%), Positives = 22/42 (52%)
Frame = +1
Query: 733 TTILISLLDSEXHQFSXGGPRNXFRPXSESYYNSWAVRLQLR 858
+T L ++ ++E F P F P E YN+ AVR+ +R
Sbjct: 903 STALATIPENENTTFVVTTPSGQFNPDKERIYNAGAVRVLIR 944
>At1g48090.2 68414.m05363 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 3427
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 530 TLSFVDNCCVAPRITIVQAEPNATPEKRIKLSSPIRTS 417
+LS D P+++++ PN PE R+ L S + S
Sbjct: 1654 SLSETDLYVSVPKVSVLDIRPNTKPEMRLMLGSSVDAS 1691
>At1g48090.1 68414.m05362 C2 domain-containing protein contains Pfam
profile: PF00168 C2 domain
Length = 4144
Score = 28.7 bits (61), Expect = 6.0
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -3
Query: 530 TLSFVDNCCVAPRITIVQAEPNATPEKRIKLSSPIRTS 417
+LS D P+++++ PN PE R+ L S + S
Sbjct: 1654 SLSETDLYVSVPKVSVLDIRPNTKPEMRLMLGSSVDAS 1691
>At3g63150.1 68416.m07092 GTP-binding protein-related low similarity
to SP|Q38912 RAC-like GTP binding protein ARAC3
(GTP-binding protein ROP6) {Arabidopsis thaliana};
contains Pfam profile PF00036: EF hand (domain)
Length = 643
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = -3
Query: 371 NVDTISPPVTKPSLSIPSKSACSIAITPASANN 273
NV + PP+T P+ + P +I TP+S +N
Sbjct: 42 NVPRVLPPITLPADAFPDYIPITIVDTPSSIDN 74
>At1g29450.1 68414.m03603 auxin-responsive protein, putative similar
to auxin-induced protein 6B (SP:P33083) [Glycine max]
Length = 141
Score = 28.3 bits (60), Expect = 7.9
Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 4/66 (6%)
Frame = +1
Query: 328 ERLGLVTGGEIVSTFDSPDKVKLGHCKLIEEVLIGDES---LIRFSGVALGSACTIVIR- 495
E GL TGG I S FDS L KL++ + D L+ S S C++ ++
Sbjct: 75 EEFGLPTGGPITSPFDSVFLEYL--IKLVQRRMDADTEKALLMSISSARCSSQCSLKLQE 132
Query: 496 GATQQL 513
+TQQL
Sbjct: 133 RSTQQL 138
>At1g19700.1 68414.m02457 homeobox-leucine zipper family protein
similar to BEL1-like homeodomain 1 (GI:13877517)
[Arabidopsis thaliana]; similar to homeodomain protein
GI:7239157 from (Malus domestica); contains weak hit to
Pfam profile PF00046: Homeobox domain
Length = 538
Score = 28.3 bits (60), Expect = 7.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 125 GSTIKVDSMAKIAELEVAEKEKMKDKVNKIL 217
G + DS K EL E+E++++K NK+L
Sbjct: 213 GGELSSDSNGKSIELSTIEREELQNKKNKLL 243
>At1g05800.1 68414.m00606 lipase class 3 family protein similar to
DEFECTIVE IN ANTHER DEHISCENCE1 [Arabidopsis thaliana]
GI:16215706; contains Pfam profile PF01764: Lipase
Length = 471
Score = 28.3 bits (60), Expect = 7.9
Identities = 14/28 (50%), Positives = 20/28 (71%)
Frame = -3
Query: 362 TISPPVTKPSLSIPSKSACSIAITPASA 279
T+SPP++ LS+PS S+ S AI P+ A
Sbjct: 47 TMSPPISSSPLSLPSSSS-SQAIPPSRA 73
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,412,215
Number of Sequences: 28952
Number of extensions: 317774
Number of successful extensions: 858
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 817
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 857
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2295205728
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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