Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0258.Seq
(900 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC336.10c |tif512||translation initiation factor|Schizosacchar... 118 2e-27
SPAC26H5.10c |tif51||translation initiation factor eIF5A|Schizos... 118 2e-27
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 2.7
SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic... 27 4.8
SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|ch... 27 4.8
>SPBC336.10c |tif512||translation initiation
factor|Schizosaccharomyces pombe|chr 2|||Manual
Length = 157
Score = 118 bits (283), Expect = 2e-27
Identities = 52/76 (68%), Positives = 62/76 (81%)
Frame = +1
Query: 52 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 231
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 232 VGIDIFNGKSMKISVP 279
V +DIFNG+ + P
Sbjct: 61 VALDIFNGRKYEDMSP 76
Score = 103 bits (246), Expect = 5e-23
Identities = 43/85 (50%), Positives = 65/85 (76%)
Frame = +3
Query: 255 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRT 434
+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+LG ++
Sbjct: 69 RKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEE 127
Query: 435 DFDSGKELLCTVLKSCGEECVIAVK 509
F+ GK+L+ TV+ + GEE +A +
Sbjct: 128 GFEEGKDLIITVVSAMGEEIALACR 152
>SPAC26H5.10c |tif51||translation initiation factor
eIF5A|Schizosaccharomyces pombe|chr 1|||Manual
Length = 157
Score = 118 bits (283), Expect = 2e-27
Identities = 52/76 (68%), Positives = 62/76 (81%)
Frame = +1
Query: 52 MGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHL 231
M + E FE G++GAS TFPMQCSALRKNG V++KGRPCKIV+MSTSKTGKHGHAKVH+
Sbjct: 1 MAEEEHVDFEGGEAGASLTFPMQCSALRKNGHVVIKGRPCKIVDMSTSKTGKHGHAKVHI 60
Query: 232 VGIDIFNGKSMKISVP 279
V +DIFNG+ + P
Sbjct: 61 VALDIFNGRKYEDMSP 76
Score = 103 bits (248), Expect = 3e-23
Identities = 44/90 (48%), Positives = 66/90 (73%)
Frame = +3
Query: 255 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRT 434
+KYED+ PSTHNMDVP VKR++YQL +I DDGYL LM +G ++D+++P+G+LG ++
Sbjct: 69 RKYEDMSPSTHNMDVPVVKRDEYQLVNI-DDGYLNLMTTDGTTKDDVRLPEGELGNEIEE 127
Query: 435 DFDSGKELLCTVLKSCGEECVIAVKQTQLS 524
FD G++L+ TV+ + GEE +A + S
Sbjct: 128 GFDEGRDLIITVVSAMGEETALACRDAPSS 157
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/43 (37%), Positives = 25/43 (58%), Gaps = 2/43 (4%)
Frame = -3
Query: 508 LTAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
LTA+ S+P S+V N+S P++ S V P + S ++ SS
Sbjct: 2571 LTALNSSTPITSSSVLNSSTPITSSTVVNTSTPITSSTVVNSS 2613
Score = 27.1 bits (57), Expect = 3.6
Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S V P + S +L SS
Sbjct: 1420 TVVNTSTPITSSTVVNSSTPITSSTVVNTSTPITSSSVLNSS 1461
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
+ + S+P STV N S P++ S V + P + S +L SS
Sbjct: 820 SVLNSSTPITSSTVVNTSTPITSSTVVNSSTPITSSSVLNSS 861
Score = 26.2 bits (55), Expect = 6.3
Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSSRRSPLSAI 362
T + S+P STV N+S P++ S + P + S +L SS S+I
Sbjct: 1192 TVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSSTPITSSSI 1241
Score = 26.2 bits (55), Expect = 6.3
Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
+ + S+P STV N+S P++ S + +P + S +L SS
Sbjct: 1252 SVLNSSTPITSSTVVNSSTPITSSTALNTSIPITSSSVLNSS 1293
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + + P + S +L SS
Sbjct: 1372 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 1413
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 1732 TVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 1773
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + + P + S +L SS
Sbjct: 2212 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 2253
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + + P + S +L SS
Sbjct: 2500 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 2541
Score = 26.2 bits (55), Expect = 6.3
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + + P + S +L SS
Sbjct: 2800 TVVNTSTPITSSTVVNSSTPITSSTVLNSSTPITSSSVLNSS 2841
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 484 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 525
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 892 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 933
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 1048 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 1089
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 1504 TVVNTSTPITSSTVVNSSTPITSSTVLNTSTPITSSSVLNSS 1545
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 1828 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 1869
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 2020 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2061
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 2284 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2325
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 2596 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2637
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 2692 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2733
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 2920 TVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSS 2961
Score = 25.8 bits (54), Expect = 8.4
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -3
Query: 505 TAMTHSSPQDFSTVHNNSLPLSKS--VRNCVPRSPSGILRSS 386
T + S+P STV N+S P++ S + P + S +L SS
Sbjct: 3280 TVVNTSTPITSSTVVNSSTPITSSTTLNTSTPITSSSVLNSS 3321
>SPBC19G7.05c |bgs1|cps1, drc1|1,3-beta-glucan synthase catalytic
subunit Bgs1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1729
Score = 26.6 bits (56), Expect = 4.8
Identities = 9/23 (39%), Positives = 15/23 (65%)
Frame = +3
Query: 288 NMDVPHVKREDYQLTDISDDGYL 356
NM +P+++ E Q+ D + D YL
Sbjct: 968 NMSIPYIRGEYVQMIDANQDNYL 990
>SPCC825.04c |||N-acetyltransferase |Schizosaccharomyces pombe|chr
3|||Manual
Length = 204
Score = 26.6 bits (56), Expect = 4.8
Identities = 12/32 (37%), Positives = 18/32 (56%)
Frame = +3
Query: 144 FRYAEGSSMQDC*NVHIQNRKARPR*SSLGWD 239
+ + E +Q C N+ +N +A R SS GWD
Sbjct: 41 YHHLEKGLLQQCFNLVKKNMEALYRQSSFGWD 72
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,505,498
Number of Sequences: 5004
Number of extensions: 70952
Number of successful extensions: 325
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 215
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 313
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -