Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0258.Seq
         (900 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)                99   6e-21
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.3  
SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)                30   2.9  
SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)            24   3.6  
SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)               29   3.9  
SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)                   28   8.9  
SB_43823| Best HMM Match : MAM (HMM E-Value=0)                         28   8.9  
SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)                  28   8.9  

>SB_27207| Best HMM Match : eIF-5a (HMM E-Value=3.1e-15)
          Length = 710

 Score = 98.7 bits (235), Expect = 6e-21
 Identities = 43/60 (71%), Positives = 51/60 (85%)
 Frame = +1

Query: 46  TTMGDIEDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKV 225
           T   ++ DT F +G+SGAS T+P QCS+LRKNG V++KGRPCKIVEMSTSKTGKHGHAKV
Sbjct: 585 TMAEELADTEFHSGESGASDTYPAQCSSLRKNGHVVIKGRPCKIVEMSTSKTGKHGHAKV 644



 Score = 70.5 bits (165), Expect = 2e-12
 Identities = 29/62 (46%), Positives = 44/62 (70%)
 Frame = +3

Query: 324 QLTDISDDGYLTLMADNGDLREDLKIPDGDLGTQLRTDFDSGKELLCTVLKSCGEECVIA 503
           ++T+I +DGYL LM DNGD R D+K+ D D+  ++R  F++ +  + TVLK+ GEE V+ 
Sbjct: 643 KVTNIEEDGYLELMDDNGDTRADIKLQDNDIAKEIRAKFEASENFMVTVLKAMGEETVVG 702

Query: 504 VK 509
           VK
Sbjct: 703 VK 704


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 31.1 bits (67), Expect = 1.3
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -3

Query: 523  ESC--VCLTAMTHSSPQDFSTVHNNSLPLSKSVRNCVPRSPS 404
            +SC  +C T+   S P    + H+N+ P   S  NC P  PS
Sbjct: 1285 QSCPKICFTSCKPSCPVHCCSEHSNACPQECSTDNCKPSCPS 1326


>SB_579| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 154

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +1

Query: 136 KNGFVMLKGRPCKIV-EMSTSKTGKHGHAKVHLVGIDIFNGKSMKISVPPH 285
           + G +M +G+PCKI   +   K G HG   +H+ G D  NG    +S  PH
Sbjct: 17  RRGVMMAEGKPCKITGTIEGLKAGNHGF-HIHVYG-DNTNG---CVSAGPH 62


>SB_5387| Best HMM Match : DNA_pol_E_B (HMM E-Value=9.2e-35)
          Length = 458

 Score = 24.2 bits (50), Expect(2) = 3.6
 Identities = 13/54 (24%), Positives = 26/54 (48%)
 Frame = +2

Query: 110 SPCNVRPCVKMVSLC*RVVHARLLKCPHPKPESTATLKFTWLGLISSMEKV*RY 271
           +PC ++ C + +S+    V   ++K P   P    TL   ++G  +   K+ +Y
Sbjct: 398 NPCRIQYCTQEISMTPIHVLLLIVKAPILDPSLVVTLCSRFIGHQARKLKIVKY 451



 Score = 23.8 bits (49), Expect(2) = 3.6
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = +2

Query: 92  PGPQPPSPCNVRP 130
           PGPQ P P N+ P
Sbjct: 362 PGPQDPGPGNILP 374


>SB_14043| Best HMM Match : Extensin_1 (HMM E-Value=0.75)
          Length = 568

 Score = 29.5 bits (63), Expect = 3.9
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +2

Query: 11  HISFLTVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRPC 133
           H   L   K KT +  T+K +T +P T  P+   P   +PC
Sbjct: 92  HTIKLYTTKPKTTKPHTNKPYTTKPRTTKPRTTKPHTTKPC 132



 Score = 29.1 bits (62), Expect = 5.1
 Identities = 14/46 (30%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +2

Query: 59  TSKTHTLRPETPGPQPPSPCNVRPCVKMVSLC*RVVH-ARLLKCPH 193
           T+K HT +P T  P    P N+ P +   +L   ++H     + PH
Sbjct: 168 TTKPHTTKPHTTKPHTTKPHNIDPTLPSPTLLNALLHFLYFYQAPH 213


>SB_7383| Best HMM Match : SapA (HMM E-Value=1.2e-13)
          Length = 492

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 17/44 (38%), Positives = 22/44 (50%)
 Frame = -3

Query: 484 PQDFSTVHNNSLPLSKSVRNCVPRSPSGILRSSRRSPLSAIRVR 353
           P+  S V + +LP+   V  C+P SPS I RS    P     VR
Sbjct: 253 PRQISNVRSLTLPVRYQVIGCLP-SPSDIKRSVPYPPRQISNVR 295


>SB_43823| Best HMM Match : MAM (HMM E-Value=0)
          Length = 1724

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 13/28 (46%), Positives = 18/28 (64%), Gaps = 2/28 (7%)
 Frame = -3

Query: 148  RNHFYAGPNIAW--GRWLRPRSLRSQSV 71
            R  F+  PN+A   G+WL P+SLR+  V
Sbjct: 947  REGFFNNPNLAGCKGQWLGPKSLRASRV 974


>SB_6893| Best HMM Match : PPV_E2_C (HMM E-Value=0.94)
          Length = 1058

 Score = 28.3 bits (60), Expect = 8.9
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +2

Query: 26  TVVKFKTQQWVTSKTHTLRPETPGPQPPSPCNVRP 130
           +VV     + VT K  T +P TP P  P P   RP
Sbjct: 758 SVVAMPAARPVTPKPVTPKPVTPKPVTPKPVTTRP 792


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,194,233
Number of Sequences: 59808
Number of extensions: 594208
Number of successful extensions: 1786
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1624
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1778
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2586032617
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)