Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0258.Seq
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical pr...   121   8e-28
Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical p...   109   3e-24
CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical ...    31   1.1  
Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical pr...    29   4.5  
AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical...    29   6.0  

>Z49967-1|CAA90247.1|  161|Caenorhabditis elegans Hypothetical
           protein F54C9.1 protein.
          Length = 161

 Score =  121 bits (291), Expect = 8e-28
 Identities = 54/72 (75%), Positives = 60/72 (83%)
 Frame = +1

Query: 64  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 243
           +D HF TGDSGA+ATFP QCSALRKN  VM+KGRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 7   DDEHFHTGDSGAAATFPKQCSALRKNEHVMIKGRPCKIVEMSTSKTGKHGHAKVHMVAID 66

Query: 244 IFNGKSMKISVP 279
           IF  K ++   P
Sbjct: 67  IFTSKKLEDICP 78



 Score = 83.0 bits (196), Expect = 3e-16
 Identities = 42/87 (48%), Positives = 60/87 (68%), Gaps = 2/87 (2%)
 Frame = +3

Query: 255 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLR 431
           KK EDICPSTHNMDVP VKR +Y L  I DDGY +LM  ++ + ++DLK+PD +LG Q+R
Sbjct: 71  KKLEDICPSTHNMDVPVVKRREYLLMAI-DDGYCSLMDPESCEQKDDLKLPDTELGQQIR 129

Query: 432 TDFDSGK-ELLCTVLKSCGEECVIAVK 509
             ++  +  +L  V+ + GEE ++  K
Sbjct: 130 DAYEKDEGSVLVQVVSAIGEEAILGWK 156


>Z27079-13|CAA81597.2|  195|Caenorhabditis elegans Hypothetical
           protein T05G5.10 protein.
          Length = 195

 Score =  109 bits (262), Expect = 3e-24
 Identities = 48/72 (66%), Positives = 59/72 (81%)
 Frame = +1

Query: 64  EDTHFETGDSGASATFPMQCSALRKNGFVMLKGRPCKIVEMSTSKTGKHGHAKVHLVGID 243
           ++  F++ +SGA+ATFP QCSALRKN  VM++GRPCKIVEMSTSKTGKHGHAKVH+V ID
Sbjct: 41  DEEQFDSAESGAAATFPKQCSALRKNEHVMIRGRPCKIVEMSTSKTGKHGHAKVHMVAID 100

Query: 244 IFNGKSMKISVP 279
           IF  K ++   P
Sbjct: 101 IFTTKKLEDICP 112



 Score = 86.6 bits (205), Expect = 2e-17
 Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 2/87 (2%)
 Frame = +3

Query: 255 KKYEDICPSTHNMDVPHVKREDYQLTDISDDGYLTLM-ADNGDLREDLKIPDGDLGTQLR 431
           KK EDICPSTHNMDVP VKR +Y L  I +DG+ +LM  ++ +L++DLK+P+GDLG  +R
Sbjct: 105 KKLEDICPSTHNMDVPVVKRREYILMSI-EDGFCSLMDPESCELKDDLKMPEGDLGNTIR 163

Query: 432 TDFDSGK-ELLCTVLKSCGEECVIAVK 509
              +  +  +L  V+ +CGEE ++  K
Sbjct: 164 EALEKDEGSVLVQVVAACGEEAILGYK 190


>CU457743-2|CAM36365.1|  695|Caenorhabditis elegans Hypothetical
           protein K09E10.2 protein.
          Length = 695

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
 Frame = +3

Query: 288 NMDVPHVKREDYQLTDI--SDDGYLTLMADNGDLREDLKIPDGDLGTQLRTD-FDSGKEL 458
           N  +P +K++ Y L     ++ GY+  +   GDL+   KI D      LR D ++ G+  
Sbjct: 573 NKFIPFIKKKLYILDSFPRANSGYIARVP--GDLKNGKKIEDISKA-MLRPDGYERGRLR 629

Query: 459 LCTVLKSCGEEC 494
              ++K CG++C
Sbjct: 630 HAALVKECGDKC 641


>Z47072-2|CAA87369.3| 1317|Caenorhabditis elegans Hypothetical
           protein F26C11.3 protein.
          Length = 1317

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 13/27 (48%), Positives = 19/27 (70%), Gaps = 1/27 (3%)
 Frame = +2

Query: 656 GARKTAGXPSPSLTS-FANTSTPSISP 733
           G +KT+  P+PS TS  + T+TPS +P
Sbjct: 561 GCKKTSSTPTPSSTSVHSTTATPSTTP 587


>AF003386-14|AAK82896.1|  811|Caenorhabditis elegans Hypothetical
           protein F59E12.1 protein.
          Length = 811

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 12/24 (50%), Positives = 13/24 (54%)
 Frame = +2

Query: 59  TSKTHTLRPETPGPQPPSPCNVRP 130
           T K  T R E+P P PP P   RP
Sbjct: 358 TEKPETPRAESPDPLPPPPSKKRP 381


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,879,863
Number of Sequences: 27780
Number of extensions: 423904
Number of successful extensions: 1179
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 1093
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1174
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)