Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0257.Seq
         (900 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3; Eukaryo...    80   7e-14
UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1; ...    76   1e-12
UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular organ...    76   1e-12
UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: L...    76   1e-12
UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep: Bet...    76   1e-12
UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:...    54   4e-06
UniRef50_P06219 Cluster: Beta-galactosidase; n=11; Gammaproteoba...    46   0.002
UniRef50_A7MN76 Cluster: Putative uncharacterized protein; n=1; ...    44   0.007
UniRef50_P81650 Cluster: Beta-galactosidase; n=26; Gammaproteoba...    37   0.61 
UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3; ...    36   1.9  
UniRef50_Q48727 Cluster: Beta-galactosidase; n=3; Lactococcus la...    35   3.3  
UniRef50_A0UVE2 Cluster: Glycoside hydrolase family 2, TIM barre...    34   5.7  
UniRef50_Q38ES8 Cluster: Protein kinase, putative; n=1; Trypanos...    33   7.5  
UniRef50_A7NQP1 Cluster: Putative uncharacterized protein; n=1; ...    33   9.9  
UniRef50_A4FL95 Cluster: Putative regulatory protein; n=1; Sacch...    33   9.9  

>UniRef50_UPI0000498F17 Cluster: beta-galactosidase; n=3;
           Eukaryota|Rep: beta-galactosidase - Entamoeba
           histolytica HM-1:IMSS
          Length = 86

 Score = 80.2 bits (189), Expect = 7e-14
 Identities = 37/50 (74%), Positives = 43/50 (86%)
 Frame = +2

Query: 509 FYNVVTGKTLALPNLIALQHIPLSPAGVIAKKARTDSPFPNSCAXEWRIA 658
           FYNVVTGKTLALPNLIALQHIPLSPAGVI+++ARTD P     + +WR+A
Sbjct: 9   FYNVVTGKTLALPNLIALQHIPLSPAGVISEEARTDRPSQQLRSLKWRMA 58


>UniRef50_Q8GEG0 Cluster: Putative uncharacterized protein; n=1;
           Erwinia amylovora|Rep: Putative uncharacterized protein
           - Erwinia amylovora (Fire blight bacteria)
          Length = 123

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 36/44 (81%), Positives = 37/44 (84%)
 Frame = +1

Query: 508 LLQRRDWENPGVTQLNRLAAHPPFASWRNSEEGPHRFALSQQLR 639
           +LQRRDWENPGVTQLNRLAAHPPFASWRNSEE       SQQLR
Sbjct: 71  VLQRRDWENPGVTQLNRLAAHPPFASWRNSEEA-RTDRPSQQLR 113


>UniRef50_Q47336 Cluster: LacZ-alpha peptide; n=2; cellular
           organisms|Rep: LacZ-alpha peptide - Escherichia coli
          Length = 90

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 36/44 (81%), Positives = 37/44 (84%)
 Frame = +1

Query: 508 LLQRRDWENPGVTQLNRLAAHPPFASWRNSEEGPHRFALSQQLR 639
           +LQRRDWENPGVTQLNRLAAHPPFASWRNSEE       SQQLR
Sbjct: 25  VLQRRDWENPGVTQLNRLAAHPPFASWRNSEEA-RTDRPSQQLR 67


>UniRef50_Q37953 Cluster: LacZ protein; n=1; Phage M13mp18|Rep: LacZ
           protein - Phage M13mp18
          Length = 102

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 36/44 (81%), Positives = 37/44 (84%)
 Frame = +1

Query: 508 LLQRRDWENPGVTQLNRLAAHPPFASWRNSEEGPHRFALSQQLR 639
           +LQRRDWENPGVTQLNRLAAHPPFASWRNSEE       SQQLR
Sbjct: 29  VLQRRDWENPGVTQLNRLAAHPPFASWRNSEEA-RTDRPSQQLR 71


>UniRef50_P00722 Cluster: Beta-galactosidase; n=35; root|Rep:
           Beta-galactosidase - Escherichia coli (strain K12)
          Length = 1024

 Score = 75.8 bits (178), Expect = 1e-12
 Identities = 36/44 (81%), Positives = 37/44 (84%)
 Frame = +1

Query: 508 LLQRRDWENPGVTQLNRLAAHPPFASWRNSEEGPHRFALSQQLR 639
           +LQRRDWENPGVTQLNRLAAHPPFASWRNSEE       SQQLR
Sbjct: 11  VLQRRDWENPGVTQLNRLAAHPPFASWRNSEEA-RTDRPSQQLR 53


>UniRef50_Q669R9 Cluster: Beta-galactosidase; n=14; Yersinia|Rep:
           Beta-galactosidase - Yersinia pseudotuberculosis
          Length = 1066

 Score = 54.4 bits (125), Expect = 4e-06
 Identities = 21/32 (65%), Positives = 26/32 (81%)
 Frame = +1

Query: 505 RLLQRRDWENPGVTQLNRLAAHPPFASWRNSE 600
           ++L RRDWENP +TQ +RL AHPPF SWR+ E
Sbjct: 17  QILSRRDWENPQITQYHRLEAHPPFHSWRDVE 48


>UniRef50_P06219 Cluster: Beta-galactosidase; n=11;
           Gammaproteobacteria|Rep: Beta-galactosidase - Klebsiella
           pneumoniae
          Length = 1034

 Score = 45.6 bits (103), Expect = 0.002
 Identities = 18/29 (62%), Positives = 21/29 (72%)
 Frame = +1

Query: 508 LLQRRDWENPGVTQLNRLAAHPPFASWRN 594
           +L R DW N  +T LNRL AHP FASWR+
Sbjct: 17  VLAREDWHNQTITHLNRLPAHPVFASWRD 45


>UniRef50_A7MN76 Cluster: Putative uncharacterized protein; n=1;
           Enterobacter sakazakii ATCC BAA-894|Rep: Putative
           uncharacterized protein - Enterobacter sakazakii ATCC
           BAA-894
          Length = 1043

 Score = 43.6 bits (98), Expect = 0.007
 Identities = 14/31 (45%), Positives = 22/31 (70%)
 Frame = +1

Query: 508 LLQRRDWENPGVTQLNRLAAHPPFASWRNSE 600
           +L R DW+NP +T +NRL +H P   WR+++
Sbjct: 21  ILARNDWQNPAITSVNRLPSHTPLHGWRDAD 51


>UniRef50_P81650 Cluster: Beta-galactosidase; n=26;
           Gammaproteobacteria|Rep: Beta-galactosidase -
           Pseudoalteromonas haloplanktis (Alteromonas
           haloplanktis)
          Length = 1039

 Score = 37.1 bits (82), Expect = 0.61
 Identities = 13/32 (40%), Positives = 21/32 (65%)
 Frame = +1

Query: 508 LLQRRDWENPGVTQLNRLAAHPPFASWRNSEE 603
           ++ RRDWENP   Q+N++ AH P   ++  E+
Sbjct: 7   IINRRDWENPITVQVNQVKAHSPLNGFKTIED 38


>UniRef50_Q4Z0C1 Cluster: Putative uncharacterized protein; n=3;
           Plasmodium (Vinckeia)|Rep: Putative uncharacterized
           protein - Plasmodium berghei
          Length = 275

 Score = 35.5 bits (78), Expect = 1.9
 Identities = 15/16 (93%), Positives = 16/16 (100%)
 Frame = +3

Query: 447 QGGARYPIRPIVSRIT 494
           +GGARYPIRPIVSRIT
Sbjct: 260 RGGARYPIRPIVSRIT 275


>UniRef50_Q48727 Cluster: Beta-galactosidase; n=3; Lactococcus
           lactis|Rep: Beta-galactosidase - Lactococcus lactis
           subsp. lactis (Streptococcus lactis)
          Length = 998

 Score = 34.7 bits (76), Expect = 3.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 508 LLQRRDWENPGVTQLNRLAAHPP 576
           +L+R+DWENP V+  NRL  H P
Sbjct: 9   VLERKDWENPVVSNWNRLPMHTP 31


>UniRef50_A0UVE2 Cluster: Glycoside hydrolase family 2, TIM barrel;
           n=1; Clostridium cellulolyticum H10|Rep: Glycoside
           hydrolase family 2, TIM barrel - Clostridium
           cellulolyticum H10
          Length = 1033

 Score = 33.9 bits (74), Expect = 5.7
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 520 RDWENPGVTQLNRLAAHPPFASWRNSEE 603
           R+WEN  +TQ+NR   H P+ ++ + E+
Sbjct: 3   REWENQYITQINRYPMHSPYGAYESVEQ 30


>UniRef50_Q38ES8 Cluster: Protein kinase, putative; n=1; Trypanosoma
           brucei|Rep: Protein kinase, putative - Trypanosoma
           brucei
          Length = 692

 Score = 33.5 bits (73), Expect = 7.5
 Identities = 18/46 (39%), Positives = 28/46 (60%)
 Frame = +1

Query: 88  ARYVNV*RPEKTCTSLLVMHRDPFVVDLRRSRGIPYEFYSFRTRSD 225
           ARYV V R       +L+ HR+P +++  R +GI + F+S  TR+D
Sbjct: 50  ARYVVVKRTFFKIDEVLLAHREPEILNRVRDKGILHVFHSEVTRND 95


>UniRef50_A7NQP1 Cluster: Putative uncharacterized protein; n=1;
           Roseiflexus castenholzii DSM 13941|Rep: Putative
           uncharacterized protein - Roseiflexus castenholzii DSM
           13941
          Length = 472

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +2

Query: 512 YNVVTGKTLALPNLIALQHIPLSPAGVIAKKARTDSPFP 628
           Y  VT +T A+ N IAL  +P  P   I ++ +  SPFP
Sbjct: 377 YRSVTLQTFAIGNQIALPAVPGEPFCEIGRRVKVGSPFP 415


>UniRef50_A4FL95 Cluster: Putative regulatory protein; n=1;
           Saccharopolyspora erythraea NRRL 2338|Rep: Putative
           regulatory protein - Saccharopolyspora erythraea (strain
           NRRL 23338)
          Length = 262

 Score = 33.1 bits (72), Expect = 9.9
 Identities = 20/46 (43%), Positives = 24/46 (52%), Gaps = 5/46 (10%)
 Frame = -2

Query: 623 RANRCGPSSLLRQLAKG-----GCAARRLSWVTPGFSQSRRCKRRP 501
           RA+RC P+   R+ + G     GCAAR  SW T       RC RRP
Sbjct: 189 RAHRCRPN--WRRCSPGCGRARGCAARPASWPTAPSPSRSRCTRRP 232


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 869,017,599
Number of Sequences: 1657284
Number of extensions: 17470005
Number of successful extensions: 41387
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 39818
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41342
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)