Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0257.Seq
         (900 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    28   2.1  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    26   6.3  
SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1 |S...    26   8.4  

>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 27.9 bits (59), Expect = 2.1
 Identities = 13/45 (28%), Positives = 21/45 (46%)
 Frame = -2

Query: 200 NSYGIPRDRLKSTTNGSRCITKREVHVFSGR*TFTYRADGERTHE 66
           N +G   D +K  ++   C T+   H+  G  +    +D E THE
Sbjct: 219 NKWGHQFDIVKPDSSSCCCFTRGYTHLVQGAGSILQMSDHENTHE 263


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1461

 Score = 26.2 bits (55), Expect = 6.3
 Identities = 15/59 (25%), Positives = 26/59 (44%)
 Frame = +1

Query: 673  NILLKFALNFC*SAHFLTNKAEIGKIPYKSKNRPR*GLXVVPVWNKKSTYLKKRXTSNV 849
            N+  KF LNF  +A    +   +  +  K  N PR     V + +++S+ L      N+
Sbjct: 870  NVFTKFCLNFDITAKVFIDNGLLDFLDEKFDNTPREDFVAVEISDQRSSLLPDTVEQNM 928


>SPAC4A8.11c |fas2|lsd1|fatty acid synthase alpha subunit Lsd1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1842

 Score = 25.8 bits (54), Expect = 8.4
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 715 HFLTNKAEIGKIPYKSKNRPR 777
           H++T  A+ GK+P +SKN+ +
Sbjct: 520 HYVTEMAKGGKLPTESKNKAK 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,531,745
Number of Sequences: 5004
Number of extensions: 70482
Number of successful extensions: 160
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 160
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 454497130
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)