Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0257.Seq
         (900 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,398...    29   6.7  
08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,452...    29   6.7  
01_07_0213 - 42028941-42029055,42029444-42029480,42029876-420302...    29   6.7  

>12_01_0503 - 3981603-3981730,3982858-3983023,3983057-3983139,
            3983250-3983301,3983497-3983654,3983756-3985617,
            3986029-3986093,3986176-3986340,3986836-3986893,
            3987479-3987590,3987661-3987712,3988080-3988140,
            3988220-3988377,3988705-3988787,3988897-3988945,
            3989122-3989185,3990225-3990317,3990410-3990543,
            3991364-3991585,3991815-3991937,3992103-3992267,
            3993064-3993450
          Length = 1479

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 474  GELGTGPPPVSSQTFKQTRTSPRLH-GCDNRRVALASALRQETRKYDV 334
            G  G  PPP SS + ++ R+ P  H GCD+  V+L    R    K D+
Sbjct: 893  GSSGKPPPP-SSPSVRRVRSLPARHAGCDD--VSLVEKFRNAMAKRDL 937


>08_01_0519 - 4518256-4519623,4520840-4521230,4521313-4521525,
            4521632-4521723,4522226-4522342,4522641-4522704,
            4523175-4523228,4523579-4523666,4523788-4524023,
            4525258-4525478,4525634-4525827,4525938-4525995,
            4526771-4526824,4526851-4527473,4527580-4527640,
            4528417-4528590,4528803-4529063,4529201-4529320,
            4529388-4530022,4530062-4530828,4530915-4531012,
            4531101-4531155,4531230-4531318
          Length = 2010

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = +2

Query: 317  PARRKSTSYFLVSCLSADASATRLLSQPCSLGLVRVCLNVCD 442
            P RRK  S  L       +S    LSQ C+ G++ + L++CD
Sbjct: 1319 PNRRKGESQELKQINPLHSSHLHALSQACAPGVILMPLDLCD 1360


>01_07_0213 -
           42028941-42029055,42029444-42029480,42029876-42030244,
           42030332-42031201,42051574-42052891
          Length = 902

 Score = 28.7 bits (61), Expect = 6.7
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -2

Query: 515 CKRRPVNCNTTHYRANWVPGPPLYHRRRSNKHALVRDCTAATTDAS 378
           CK R  +C+T H ++ WVP      R++    A     TA+   AS
Sbjct: 652 CKSRGFDCST-HVKSTWVPAARRRERQQLTGSASSSPATASAAAAS 696


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,539,453
Number of Sequences: 37544
Number of extensions: 487345
Number of successful extensions: 1139
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1138
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2542098580
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)