Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0257.Seq
         (900 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY310330-1|AAQ76970.1|  158|Homo sapiens GPRA isoform D protein.       33   1.9  
AY358206-1|AAQ88573.1|  280|Homo sapiens KTSR5831 protein.             30   10.0 

>AY310330-1|AAQ76970.1|  158|Homo sapiens GPRA isoform D protein.
          Length = 158

 Score = 32.7 bits (71), Expect = 1.9
 Identities = 20/61 (32%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
 Frame = -2

Query: 677 ILTLTILQFAIQXRNCWERANRCGPSSLLRQLAKGGCAARRLSWVTPGFSQSRR--CKRR 504
           +   TI+  ++   + W R  +   +  + QLA  GCAA RL ++ PG  Q R+  C R 
Sbjct: 59  LFVFTIVGNSVVLFSTWRRKKKSRMTFFVTQLAITGCAALRL-YLRPGVPQHRQIPCHRL 117

Query: 503 P 501
           P
Sbjct: 118 P 118


>AY358206-1|AAQ88573.1|  280|Homo sapiens KTSR5831 protein.
          Length = 280

 Score = 30.3 bits (65), Expect = 10.0
 Identities = 14/39 (35%), Positives = 21/39 (53%)
 Frame = -1

Query: 636 QLLGKGESVRAFFAITPAGERGMCCKAIKLGNARVFPVT 520
           +L G GE  R+F  + PA E+G+      +   +VF VT
Sbjct: 112 ELSGLGEKCRSFIDLAPASEKGLLGMVAHMMYTQVFQVT 150


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,732,787
Number of Sequences: 237096
Number of extensions: 2497178
Number of successful extensions: 5402
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 5144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5402
length of database: 76,859,062
effective HSP length: 90
effective length of database: 55,520,422
effective search space used: 11603768198
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)