Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0257.Seq
         (900 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF040646-4|AAO38629.1|  395|Caenorhabditis elegans Hypothetical ...    29   4.5  
AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical ...    29   4.5  
Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical pr...    29   6.0  
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    29   6.0  

>AF040646-4|AAO38629.1|  395|Caenorhabditis elegans Hypothetical
           protein H17B01.4b protein.
          Length = 395

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -2

Query: 233 DTRSERVLNE*N---SYGIPRDRLKSTTNGSRCITKREVHVFSGR*TFTYRADGERTHET 63
           D RS RV N+ N   ++ +P    KS       +T + +HV SGR    +R   E+  ET
Sbjct: 101 DGRSVRVWNKNNGVLAHQLPISEQKSEIQAIH-VTNQRLHVASGRTLVVFRLGDEKPVET 159

Query: 62  NVPST 48
            +  T
Sbjct: 160 VISKT 164


>AF040646-3|AAK31541.1|  946|Caenorhabditis elegans Hypothetical
           protein H17B01.4a protein.
          Length = 946

 Score = 29.1 bits (62), Expect = 4.5
 Identities = 21/65 (32%), Positives = 31/65 (47%), Gaps = 3/65 (4%)
 Frame = -2

Query: 233 DTRSERVLNE*N---SYGIPRDRLKSTTNGSRCITKREVHVFSGR*TFTYRADGERTHET 63
           D RS RV N+ N   ++ +P    KS       +T + +HV SGR    +R   E+  ET
Sbjct: 101 DGRSVRVWNKNNGVLAHQLPISEQKSEIQAIH-VTNQRLHVASGRTLVVFRLGDEKPVET 159

Query: 62  NVPST 48
            +  T
Sbjct: 160 VISKT 164


>Z46241-4|CAA86318.1|  837|Caenorhabditis elegans Hypothetical
           protein C38D4.5 protein.
          Length = 837

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 22/70 (31%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -3

Query: 223 PNVF*TNKTRTVSRAIVLNPRRTG-RDALLREKCTSSRDVKRSRTVPTENERTKRTFRQH 47
           P+   T+KT T  R  V  P  T  R    + KCT  ++V   + +PT    T  +F  H
Sbjct: 293 PDANETSKTPTAIR--VRRPSPTNLRSVSFQNKCTVLKNVPMPQVLPT----TSSSFDHH 346

Query: 46  LNARKRTPER 17
                 TP+R
Sbjct: 347 PQYHSNTPDR 356


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = -3

Query: 187 SRAIVLNPRRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 11
           SR     PR   R ++ R+     R+ +R R    E+ R +R   +    R+R+PER+R
Sbjct: 260 SRKDQRKPREDRRRSVERQ---DQREDRRDRRRSPEDPRERRRSPEDRTVRRRSPERRR 315


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,803,605
Number of Sequences: 27780
Number of extensions: 409261
Number of successful extensions: 1061
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1010
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1061
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2286823924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)