Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0257.Seq
         (900 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   2.2  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   3.8  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   3.8  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   6.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.8 bits (49), Expect = 2.2
 Identities = 11/29 (37%), Positives = 15/29 (51%)
 Frame = +2

Query: 173 DDRAGYRTSFIRLEHVRTAYRSDPRIRRY 259
           DD+ GY  S +     R  Y +DP +R Y
Sbjct: 696 DDKEGYLHSVVSGALDRLHYETDPCVRYY 724


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 349 EKIRR*LASGRTRMRKFFLGIFNACVISL 263
           EK+ + L +    +R+ F+G    C++SL
Sbjct: 414 EKVAKQLVNSVNCLRESFIGTLQRCLLSL 442


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.0 bits (47), Expect = 3.8
 Identities = 9/29 (31%), Positives = 17/29 (58%)
 Frame = -3

Query: 349 EKIRR*LASGRTRMRKFFLGIFNACVISL 263
           EK+ + L +    +R+ F+G    C++SL
Sbjct: 452 EKVAKQLVNSVNCLRESFIGTLQRCLLSL 480


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/27 (33%), Positives = 13/27 (48%)
 Frame = +1

Query: 802 WNKKSTYLKKRXTSNVXXGXKPFIKGR 882
           W K  +Y  K+  S    G + + KGR
Sbjct: 5   WGKTVSYTNKKDESYFDEGGRSYGKGR 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 247,856
Number of Sequences: 438
Number of extensions: 5540
Number of successful extensions: 13
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29146299
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)