Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0257.Seq
         (900 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g67320.1 68418.m08490 WD-40 repeat family protein strong simi...    29   5.6  
At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger) fa...    29   5.6  
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof...    29   5.6  
At5g33210.1 68418.m03923 zinc finger protein-related similar to ...    28   9.7  
At3g51060.1 68416.m05591 zinc finger protein, putative / lateral...    28   9.7  

>At5g67320.1 68418.m08490 WD-40 repeat family protein strong
           similarity to unknown protein (ref|NP_005638.1)
          Length = 613

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 142 LLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 11
           +LREK    RD+++ R    EN+  K   R+H   R R  E+ R
Sbjct: 97  MLREKKRKERDMEKERDRSKEND--KGVEREHEGDRNRAKEKDR 138


>At5g45290.1 68418.m05560 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 545

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +3

Query: 54  RNVRFVRSFSVGTVRERLTSREDV 125
           RNVRF R+ SVG +R+R+  R  +
Sbjct: 261 RNVRFSRTLSVGRLRDRVLRRSSL 284


>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
           PF00190: Cupin
          Length = 707

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -3

Query: 163 RRTGRDALLREKCTSSRDVKRSRTVPTENERTKRTFRQHLNARKRTPERKR 11
           R+   +A  RE+     + +  R    E E T+R  R+   ARKR  ERKR
Sbjct: 447 RKEEEEARKREEAKRREEEEAKRR---EEEETERKKREEEEARKREEERKR 494


>At5g33210.1 68418.m03923 zinc finger protein-related similar to
           lateral root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702),  TIGR01623: putative zinc
           finger domain, LRP1 type
          Length = 173

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -2

Query: 515 CKRRPVNCNTTHYRANWVPGPPLYHRRRSNKHALVRDCTAATTDASHSRPH*GRKRENTT 336
           CK R   C+T H R+ WVP      R R  + A V+  T      S  + H    REN  
Sbjct: 72  CKSRGFECST-HVRSTWVPATK--RRERQQQLATVQPQTQLPRGESVPKRH----RENLP 124

Query: 335 LT 330
            T
Sbjct: 125 AT 126


>At3g51060.1 68416.m05591 zinc finger protein, putative / lateral
           root primordium (LRP) protein-related similar to lateral
           root primordium 1 (LRP1) [Arabidopsis thaliana]
           GI:882341; contains Pfam profile PF05142: Domain of
           unknown function (DUF702)
          Length = 252

 Score = 27.9 bits (59), Expect = 9.7
 Identities = 21/62 (33%), Positives = 26/62 (41%)
 Frame = -2

Query: 515 CKRRPVNCNTTHYRANWVPGPPLYHRRRSNKHALVRDCTAATTDASHSRPH*GRKRENTT 336
           CK R   C+T H R+ WVP      R R  + A V+  T      S  + H    REN  
Sbjct: 164 CKSRGFECST-HVRSTWVPAAK--RRERQQQLATVQPQTQLPRGESVPKRH----RENLP 216

Query: 335 LT 330
            T
Sbjct: 217 AT 218


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,631,741
Number of Sequences: 28952
Number of extensions: 375197
Number of successful extensions: 877
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 849
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 12,070,560
effective HSP length: 81
effective length of database: 9,725,448
effective search space used: 2120147664
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)