Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0255.Seq
         (505 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2...    28   0.69 
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    27   1.2  
SPBC428.18 |cdt1||replication licensing factor Cdt1|Schizosaccha...    27   1.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    27   1.6  
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    26   2.8  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    25   8.5  
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M...    25   8.5  
SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces ...    25   8.5  

>SPBC28E12.05 |esf2|SPBC3H7.17c|U3 snoRNP-associated protein Esf2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 334

 Score = 28.3 bits (60), Expect = 0.69
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = -1

Query: 169 RVRRHTSHYERAIRVYITPTTKTIRASCCRNSQPLEILY 53
           ++R+  S Y +  RVY+TP +   RA   RN     ++Y
Sbjct: 137 KLRQILSQYGKIGRVYLTPESSAKRAQRLRNGGNKRVMY 175


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = +3

Query: 216 CARILRYSGTRMRFYFTEIYIRW 284
           C+R+  Y    + +YFT++ ++W
Sbjct: 468 CSRVRLYYNIEIAYYFTDVLLKW 490


>SPBC428.18 |cdt1||replication licensing factor
           Cdt1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 444

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 15/47 (31%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 297 LAQIPVVWRPPMLRSPCLTLSQSVSIA-LSLSFSLHFDTSVAYLRDV 434
           LAQI  VW      +PC T+ Q   +A   LS+  + +   A+ R +
Sbjct: 137 LAQILTVWPESFAITPCFTIHQGKRVATYELSYPRNANLPEAFSRSI 183


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -2

Query: 249 CAYRCNVKCERKIL*IKYEKSERASSAEYD 160
           C Y C+ KC  K++     KS  ++S+EY+
Sbjct: 437 CHYTCHKKCYPKVVTKCISKSSDSASSEYE 466


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = -3

Query: 194 RKVNEPRVQSTTPHVALRESD*GLYNSNDENDSS 93
           R VN+PR   + PH+A  + D  +  S+++N+++
Sbjct: 661 RSVNDPRRVLSLPHMASADEDHRIPASDNQNNNN 694


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +2

Query: 164 YSALEARSLFSYLIHRILRSHFTLQRYAHAFLFH*NLYSLAPL 292
           Y++ + + L  Y +   + ++F   +Y H F+F  +L ++ PL
Sbjct: 448 YASEKPQVLAQYSVSDAVATYFLYMKYVHPFIF--SLCNIIPL 488


>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
           Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 531

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 18/59 (30%), Positives = 29/59 (49%)
 Frame = +2

Query: 158 ASYSALEARSLFSYLIHRILRSHFTLQRYAHAFLFH*NLYSLAPLVARADSGRVAPAHA 334
           AS S L  +S+F YL     +  +    +A   LF  ++ + +PL ARA      P++A
Sbjct: 437 ASGSFLLFQSMFQYLAAAYPK--YVASVFAGNALFRSSMAAASPLYARAMFNNTGPSYA 493


>SPAC9G1.06c |cyk3||cytokinesis protein Cyk3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 886

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -2

Query: 339 NVAWAGATRPESARATSGANEYKFQ*NKNACAY 241
           + ++A  T P+ A  +S +N++ F    N C +
Sbjct: 592 DASFASPTHPQQALKSSSSNDFYFLMKPNECIF 624


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,755,350
Number of Sequences: 5004
Number of extensions: 30913
Number of successful extensions: 75
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)