Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0255.Seq
         (505 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0746 - 31636024-31641396                                         30   1.2  
03_01_0312 + 2469096-2470862                                           29   2.1  
05_07_0022 - 27103367-27103533,27103783-27103852,27104074-271042...    28   3.7  
10_08_0299 - 16607152-16607322,16607465-16607785,16607870-166081...    28   4.9  

>01_06_0746 - 31636024-31641396
          Length = 1790

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 16/38 (42%), Positives = 23/38 (60%), Gaps = 1/38 (2%)
 Frame = +3

Query: 297 LAQIP-VVWRPPMLRSPCLTLSQSVSIALSLSFSLHFD 407
           L ++P VVWR  ++R PCL L   + +ALS +  L  D
Sbjct: 682 LLELPAVVWRIRVVRWPCLLLKNELLLALSQAAELVAD 719


>03_01_0312 + 2469096-2470862
          Length = 588

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 12/44 (27%), Positives = 24/44 (54%)
 Frame = +3

Query: 282 WHRSSLAQIPVVWRPPMLRSPCLTLSQSVSIALSLSFSLHFDTS 413
           W+ ++   + V++R  M +  CLT   S++ A+ + F   FD +
Sbjct: 184 WYATNQFMVDVIFRNRMKQYECLTKDSSIAAAVFVPFYAGFDVA 227


>05_07_0022 -
           27103367-27103533,27103783-27103852,27104074-27104215,
           27104372-27104552,27104654-27104756
          Length = 220

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 165 TLHSRLVHFSRI*FTESCARILR 233
           TLHS++ HFS + +  SC + LR
Sbjct: 116 TLHSKVAHFSAVLYDISCGKELR 138


>10_08_0299 -
           16607152-16607322,16607465-16607785,16607870-16608121,
           16608298-16608435,16608544-16608651,16608814-16609014,
           16609109-16609233,16609252-16609321,16609919-16610455
          Length = 640

 Score = 27.9 bits (59), Expect = 4.9
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 3/53 (5%)
 Frame = +1

Query: 85  STKLESFSSLELYKP*---SLSRSATCGVVLCTRGSFTFLVFDSQNLALAFYV 234
           ++KL+SF  LE ++     SLS S T    LC  GS    ++D   L L  ++
Sbjct: 205 NSKLQSFRQLEPFEGHQVRSLSWSPTSDRFLCVTGSAQAKIYDRDGLTLGEFI 257


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,397,119
Number of Sequences: 37544
Number of extensions: 197312
Number of successful extensions: 517
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 507
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 517
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)