Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0255.Seq
         (505 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)             28   3.8  
SB_35359| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_17954| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.0  
SB_16269| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)                  28   5.0  
SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.6  

>SB_30317| Best HMM Match : Protamine_3 (HMM E-Value=0.091)
          Length = 761

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 26  NAWQSPSDSIQYFEGLRVSTARSSNRFRRWSYINPNRSLVVRRVASYSALEARS 187
           N W  PS++  Y   + +    +S    R   ++P+     R V+ +SA E R+
Sbjct: 311 NNWSPPSEANPYIPTIHIRDESTSPESVRMQEVSPSSETSRRTVSGHSAKEDRT 364


>SB_35359| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 103

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 13/26 (50%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 79  NSQPLEILYRIAR*LPGI-DTSLHCS 5
           NS+P ++ YRI   LPG+ DT L C+
Sbjct: 44  NSEPTDLCYRILCNLPGLTDTWLECN 69


>SB_17954| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 340

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 53  IQYFEGLRVSTARSSNRFR 109
           ++YF+G+RV  AR S RF+
Sbjct: 67  VKYFDGVRVQCARCSRRFK 85


>SB_16269| Best HMM Match : zf-C2H2 (HMM E-Value=0.42)
          Length = 196

 Score = 27.9 bits (59), Expect = 5.0
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +2

Query: 53  IQYFEGLRVSTARSSNRFR 109
           ++YF+G+RV  AR S RF+
Sbjct: 67  VKYFDGVRVQCARCSRRFK 85


>SB_43631| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1157

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -3

Query: 212 FCESNTRKVNEPRVQSTT 159
           F   NTRK+ EPRV+ TT
Sbjct: 522 FTAENTRKLQEPRVKGTT 539


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,796,940
Number of Sequences: 59808
Number of extensions: 257618
Number of successful extensions: 631
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1099461690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)