Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0255.Seq
         (505 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical pr...    31   0.63 
AL110485-20|CAB60368.2|  600|Caenorhabditis elegans Hypothetical...    29   2.5  
U39676-1|AAB37030.1|  186|Caenorhabditis elegans Hypothetical pr...    27   7.7  

>U58757-2|AAC47915.2|  402|Caenorhabditis elegans Hypothetical
           protein C01B10.3 protein.
          Length = 402

 Score = 30.7 bits (66), Expect = 0.63
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +1

Query: 7   SSAVMCQCLAVTERFYTIFRGAESFYSTKLESFSSLELYK 126
           ++ V+C C+      Y  F  + +F+ TKL    +L L+K
Sbjct: 59  AARVICGCITDNPEIYRAFDSSMAFFDTKLTGLGNLYLFK 98


>AL110485-20|CAB60368.2|  600|Caenorhabditis elegans Hypothetical
           protein Y46G5A.25 protein.
          Length = 600

 Score = 28.7 bits (61), Expect = 2.5
 Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
 Frame = +1

Query: 154 CGVVLCT-RGSFTFLVFDSQNLALAFYVTAVRACVFIS 264
           CGV+L T  G + F +FD         ++A   C+ IS
Sbjct: 409 CGVILTTDAGIYWFALFDEYGSGFGALISATSMCIIIS 446


>U39676-1|AAB37030.1|  186|Caenorhabditis elegans Hypothetical
           protein C23F12.4 protein.
          Length = 186

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = -3

Query: 209 CESNTRKVNEPRVQSTTPHVALRESD*GLYNSNDENDSSFVL 84
           CE +     +PR +S T  V LR+    L  ++D+N+ +FVL
Sbjct: 33  CEQHG-STEDPRKESITARVFLRKRMKELPETDDKNNKAFVL 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,905,293
Number of Sequences: 27780
Number of extensions: 176360
Number of successful extensions: 466
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 447
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 466
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)