Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0255.Seq
         (505 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    21   5.5  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor p...    21   9.6  
DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor p...    21   9.6  
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    21   9.6  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    21   9.6  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   9.6  

>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 22.6 bits (46), Expect = 2.4
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +3

Query: 237 SGTRMRFYFTEIYIRWHRSSLAQIPVVWRPP 329
           S   +RF +T+  ++W  +    I V+  PP
Sbjct: 75  SNVWLRFIWTDYQLQWDEADYGGIGVLRLPP 105


>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 21.4 bits (43), Expect = 5.5
 Identities = 11/40 (27%), Positives = 20/40 (50%)
 Frame = +3

Query: 357 SQSVSIALSLSFSLHFDTSVAYLRDVTSVKMLPSCA*RSL 476
           S  ++  L+ +  +HF  S      +   K+LP+CA + L
Sbjct: 232 SSELATRLAEAVRIHFTASRDAFYGLPLWKLLPTCAYKQL 271


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 21.0 bits (42), Expect = 7.3
 Identities = 8/31 (25%), Positives = 15/31 (48%)
 Frame = -2

Query: 309 ESARATSGANEYKFQ*NKNACAYRCNVKCER 217
           E  R     ++ K   N    +Y+ N+KC++
Sbjct: 122 EQKRRKKSLDDVKILRNDRIDSYKSNLKCDK 152


>DQ091184-1|AAZ42364.1|  157|Apis mellifera lipophorin receptor
          protein.
          Length = 157

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 51 ESLGDCQALTHHCTAL 4
          + +  CQA+  HC+ L
Sbjct: 31 DGMNQCQAVNGHCSHL 46


>DQ091183-1|AAZ42363.1|  128|Apis mellifera lipophorin receptor
          protein.
          Length = 128

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = -2

Query: 51 ESLGDCQALTHHCTAL 4
          + +  CQA+  HC+ L
Sbjct: 31 DGMNQCQAVNGHCSHL 46


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 43  ERFYTIFRGAESFYSTKLE 99
           + F    R  E++YS KLE
Sbjct: 540 DSFQAALRSIENYYSGKLE 558


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +1

Query: 43  ERFYTIFRGAESFYSTKLE 99
           + F    R  E++YS KLE
Sbjct: 578 DSFQAALRSIENYYSGKLE 596


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 20.6 bits (41), Expect = 9.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +3

Query: 153 VWRRTLHSRLVHFS 194
           VW+ TL++RLV  S
Sbjct: 907 VWQVTLNARLVELS 920


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,151
Number of Sequences: 438
Number of extensions: 2418
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 13864083
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)