Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0253.Seq
(889 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_06_0457 - 23800451-23800576,23801259-23801312,23801390-238015... 100 2e-21
12_02_0452 - 19188601-19188726,19189364-19189417,19189493-191896... 75 8e-14
02_05_0767 + 31609773-31610174,31610409-31610501,31610608-316106... 33 0.23
02_01_0567 - 4168164-4168250,4168672-4168828,4168951-4169090,417... 31 0.93
06_03_0706 + 23719392-23719641,23720337-23720383,23720988-237210... 31 1.2
04_01_0086 - 946630-947115 29 3.7
03_06_0069 - 31449319-31450368 29 3.7
12_01_0090 + 717524-719080 29 6.5
09_04_0198 + 15528576-15528645,15528746-15528893,15529182-155293... 28 8.6
02_05_0661 - 30693701-30693853,30694037-30694196,30694290-306943... 28 8.6
02_02_0109 + 6830802-6833412,6833491-6833861 28 8.6
01_01_0153 - 1352982-1353731 28 8.6
>11_06_0457 -
23800451-23800576,23801259-23801312,23801390-23801539,
23801919-23802012,23802460-23802567,23802661-23802793,
23802903-23803139,23803488-23803586,23804968-23804983
Length = 338
Score = 100 bits (239), Expect = 2e-21
Identities = 49/91 (53%), Positives = 64/91 (70%), Gaps = 3/91 (3%)
Frame = +1
Query: 244 GVVQT---ADCVCFDVDSTVIQDEGIDELAKFCGKGDEVKRLTAEAMGGNMTFQEALKKR 414
GV++T AD VCFDVDSTV DEGIDELA FCG G V TA+AM G + F+EAL R
Sbjct: 118 GVLETWCNADAVCFDVDSTVCLDEGIDELADFCGAGKAVAEWTAKAMTGTVPFEEALAAR 177
Query: 415 LDIIRPNVGQIREFIEKFPVRLTPGITELVK 507
L +I+P + Q+ + + K P R++PGI +L+K
Sbjct: 178 LSLIKPYLSQVDDCLVKRPPRISPGIADLIK 208
Score = 71.3 bits (167), Expect = 9e-13
Identities = 40/92 (43%), Positives = 52/92 (56%)
Frame = +3
Query: 504 ERLHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLQFYFHGEYAGFXXNEPTSRF 683
++L V+LVSGGFR +I+PVA L IP NI AN+L F GEYAGF EPTSR
Sbjct: 208 KKLKANNTDVFLVSGGFRQMIKPVASELGIPPENIIANQLLFGTSGEYAGFDPTEPTSRS 267
Query: 684 WWPRVSGETTEGIARVPALVIXGDXATMPKAK 779
++ + LV+ GD AT +A+
Sbjct: 268 GGKALAVQQIRQNHGYKTLVMIGDGATDLEAR 299
>12_02_0452 -
19188601-19188726,19189364-19189417,19189493-19189642,
19189994-19190087,19190607-19190710
Length = 175
Score = 74.9 bits (176), Expect = 8e-14
Identities = 42/90 (46%), Positives = 53/90 (58%)
Frame = +3
Query: 510 LHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLQFYFHGEYAGFXXNEPTSRFWW 689
L + V VYLVSGGFR +I+PVA +L IP NIFAN+L F GEY GF +EPTSR
Sbjct: 47 LKAKNVDVYLVSGGFRQMIKPVAMQLGIPPENIFANQLLFGTSGEYVGFDPSEPTSRSGG 106
Query: 690 PRVSGETTEGIARVPALVIXGDXATMPKAK 779
V+ + L + GD AT +A+
Sbjct: 107 KAVAVQNIRQKCGYRTLFMVGDGATDLEAR 136
Score = 51.2 bits (117), Expect = 1e-06
Identities = 21/45 (46%), Positives = 34/45 (75%)
Frame = +1
Query: 373 MGGNMTFQEALKKRLDIIRPNVGQIREFIEKFPVRLTPGITELVK 507
M G++ F++AL RL + +P++GQ+ + +EK P R++PGI ELVK
Sbjct: 1 MTGSVPFEKALAARLSLFKPSLGQVEDCMEKRPPRISPGIAELVK 45
>02_05_0767 +
31609773-31610174,31610409-31610501,31610608-31610668,
31610797-31610865,31611274-31611440
Length = 263
Score = 33.5 bits (73), Expect = 0.23
Identities = 21/67 (31%), Positives = 36/67 (53%)
Frame = -3
Query: 380 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTPGQSVGATSR*STPV 201
PPI+S++SL+ S+P P + P +TV + S + S+ ++P S ++ S PV
Sbjct: 4 PPISSSLSLMASNPIPS--PPVAKPGRPLTVAACSNSSSSSSSSSP-SSTSCSAAWSLPV 60
Query: 200 RASSTSR 180
S+ R
Sbjct: 61 ATSAGRR 67
>02_01_0567 -
4168164-4168250,4168672-4168828,4168951-4169090,
4170318-4170456,4170562-4170830,4170914-4171000,
4171259-4171327,4171427-4171455,4171544-4171950,
4172906-4172977,4173150-4173221,4173299-4173370,
4173454-4173519,4173717-4173785,4173866-4173995,
4174846-4174975
Length = 664
Score = 31.5 bits (68), Expect = 0.93
Identities = 33/95 (34%), Positives = 47/95 (49%), Gaps = 2/95 (2%)
Frame = -3
Query: 422 MSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTP 243
+SS F S L ++S +L +PF ++A S+ PSS T ST QT S +P
Sbjct: 182 ISSNNFSGSLPPSLGSLSSLTTLKDGNPFNTSIAPSASPSSTPT-GSTPTQTPS----SP 236
Query: 242 GQSVGATSR*STPVRAS--STSRTAGCFSNCKEPS 144
S G S S+P +S ST+R + S+ K S
Sbjct: 237 SSS-GTPSPSSSPSNSSGGSTARDSSSPSSRKHKS 270
>06_03_0706 +
23719392-23719641,23720337-23720383,23720988-23721060,
23721323-23721540,23721868-23722170,23722322-23722399,
23723064-23723549,23723875-23724312
Length = 630
Score = 31.1 bits (67), Expect = 1.2
Identities = 19/44 (43%), Positives = 26/44 (59%)
Frame = -3
Query: 389 VILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSA 258
V+ PP +S + + SSP +N + SMPSS T ES S T +A
Sbjct: 486 VLAPPSSS--NAVESSPKIENSGTKSMPSSQHTSESDSATTSAA 527
>04_01_0086 - 946630-947115
Length = 161
Score = 29.5 bits (63), Expect = 3.7
Identities = 19/64 (29%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 380 PPIASAV-SLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTPGQSVGATSR*STP 204
PP++S+V + + S++ ++ +QT + + T+PG+S ATSR S
Sbjct: 44 PPVSSSVLDRVRDVVLRLAMLSAASTTTKQGALPPQQQTATPIRTSPGRSAAATSRRSAA 103
Query: 203 VRAS 192
VR S
Sbjct: 104 VRMS 107
>03_06_0069 - 31449319-31450368
Length = 349
Score = 29.5 bits (63), Expect = 3.7
Identities = 20/67 (29%), Positives = 34/67 (50%), Gaps = 2/67 (2%)
Frame = -3
Query: 353 LTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTPGQSVGATSR*STPVRA--SSTSR 180
+ S+P P SSS SS + ++T +++ SA + GQ G + P+R ++S
Sbjct: 22 IVSNPSP---TSSSSTSSRSSAQATQQRSSSATSSPHGQGQGGGAAEQAPLRCPRCNSSN 78
Query: 179 TAGCFSN 159
T C+ N
Sbjct: 79 TKFCYYN 85
>12_01_0090 + 717524-719080
Length = 518
Score = 28.7 bits (61), Expect = 6.5
Identities = 27/78 (34%), Positives = 40/78 (51%)
Frame = -3
Query: 488 PGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPPIASAVSLLTSSPFPQNLASSSM 309
P S G +++L+ LGL+ S F A + LPP SA+SLL +P P L S S+
Sbjct: 13 PRRSAAGGHQLHALL-AKLGLLHRSEFLSALLSR-LPPSPSALSLLLEAP-PAVL-SPSL 68
Query: 308 PSSCMTVESTSKQTQSAV 255
+ S+S+ SA+
Sbjct: 69 VCPVIVAFSSSQAPSSAL 86
>09_04_0198 +
15528576-15528645,15528746-15528893,15529182-15529377,
15529512-15529604,15530403-15530462,15530563-15530637,
15531072-15531152,15531262-15531603,15531967-15531999
Length = 365
Score = 28.3 bits (60), Expect = 8.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = -3
Query: 680 SRCWLVXXEASVFTMEIKLESISEDVDSWDV*SLRDR 570
S CW+ + S++ + + + ++V SWD+ SL R
Sbjct: 235 SDCWMHVKKQSLYASADEFQDLVKEVLSWDIRSLSQR 271
>02_05_0661 -
30693701-30693853,30694037-30694196,30694290-30694381,
30694469-30694543,30694671-30694799,30694916-30695003,
30695118-30695224,30695645-30695693,30695802-30695905,
30696108-30696147,30696838-30696911
Length = 356
Score = 28.3 bits (60), Expect = 8.6
Identities = 20/67 (29%), Positives = 30/67 (44%)
Frame = +2
Query: 398 KP*RRDWTSSGLTSVRSENSLRNFQLD*LLVLQS**KVTRKRSHRISSFGRIQESNRTGR 577
KP DW +G + S S+RN ++ + K+ + IS++G E TGR
Sbjct: 237 KPIPGDWNGAGAHTNYSTKSMRN-DGGYEIIKSAIEKLKLRHKEHISAYGEGNERRLTGR 295
Query: 578 GETKHPN 598
ET N
Sbjct: 296 HETADIN 302
>02_02_0109 + 6830802-6833412,6833491-6833861
Length = 993
Score = 28.3 bits (60), Expect = 8.6
Identities = 13/37 (35%), Positives = 21/37 (56%)
Frame = +3
Query: 513 HERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRL 623
H++ +YL + GF IEP LN+ I++ +N L
Sbjct: 266 HKKLQNLYLYANGFTGEIEPNVSALNLVEIDVSSNEL 302
>01_01_0153 - 1352982-1353731
Length = 249
Score = 28.3 bits (60), Expect = 8.6
Identities = 10/21 (47%), Positives = 13/21 (61%)
Frame = -3
Query: 734 WYPCNSFSRLTTNPWPPESRC 672
W C++ RL T P PP+ RC
Sbjct: 118 WKCCDNIKRLPTKPDPPQWRC 138
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,046,712
Number of Sequences: 37544
Number of extensions: 473234
Number of successful extensions: 1372
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1321
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1369
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2495239620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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