Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0253.Seq
         (889 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)                57   2e-08
SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.94 
SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)                     30   2.9  
SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018)               29   3.8  
SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.8  
SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.0  
SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023)              29   5.0  
SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)               29   5.0  
SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   6.6  
SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)                     29   6.6  
SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)                 28   8.8  
SB_14893| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.8  

>SB_55851| Best HMM Match : Hydrolase (HMM E-Value=0.95)
          Length = 209

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 24/45 (53%), Positives = 33/45 (73%)
 Frame = +1

Query: 217 RDVAPTDCPGVVQTADCVCFDVDSTVIQDEGIDELAKFCGKGDEV 351
           R +  ++   + ++AD VCFDVDSTV+  E IDELA FCG+G+EV
Sbjct: 2   RQMTESETRVIWKSADAVCFDVDSTVVTGEAIDELASFCGRGEEV 46



 Score = 52.4 bits (120), Expect = 5e-07
 Identities = 23/47 (48%), Positives = 33/47 (70%)
 Frame = +3

Query: 489 YYRVSERLHERGVIVYLVSGGFRSLIEPVAERLNIPTINIFANRLQF 629
           +  V + L   G  VYLVSGGF+S++EP+A+ L IP  N+FAN++ F
Sbjct: 55  FRNVIDCLLSHGTQVYLVSGGFQSILEPIAKDLGIPKTNVFANKILF 101


>SB_29968| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 489

 Score = 31.5 bits (68), Expect = 0.94
 Identities = 27/72 (37%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
 Frame = -3

Query: 350 TSSPFPQNLASSSMPSSCMTVESTSKQ---TQSAV*TTPGQSVGATSR*STPVRASSTSR 180
           T  PFP   ASSS+ +   T E T  +   T      TPG S+G        +RASST  
Sbjct: 235 TLDPFPTKTASSSISNKGHTAEKTGYKGITTFIVPRETPGLSIGKKED-KLGIRASSTCP 293

Query: 179 TAGCFSNCKEPS 144
               F N K PS
Sbjct: 294 VH--FDNVKVPS 303


>SB_57471| Best HMM Match : TatC (HMM E-Value=0.27)
          Length = 687

 Score = 29.9 bits (64), Expect = 2.9
 Identities = 33/127 (25%), Positives = 59/127 (46%), Gaps = 3/127 (2%)
 Frame = -3

Query: 551 SARN*IYDD-SSFV*PFTNSVIPGVSLTGNFSMNSLI*PTLGLMMSSLFFKASWNVILPP 375
           SA + ++D  SS+  P   S+    S   N ++N        +++S      S+N  LPP
Sbjct: 24  SAASVVFDSTSSYATPLVQSISAPTS--PNVTLNRTREANSTMILSPT--SVSYNTTLPP 79

Query: 374 IASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TT--PGQSVGATSR*STPV 201
              A S  T++  P ++A+ +      T+ S+   T+S++ TT  P  S    S  +T +
Sbjct: 80  APDATSTATTAISPSSVANMT------TLVSSVNLTRSSLSTTLIPSISTSILSYNTTVI 133

Query: 200 RASSTSR 180
              +T+R
Sbjct: 134 ETPNTTR 140


>SB_12568| Best HMM Match : Na_Ca_ex (HMM E-Value=0.0018)
          Length = 349

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = -1

Query: 247 LLDSLLGRHHADRHQ*ERLQRRVL 176
           + DS      ADRH+ ER+QRRVL
Sbjct: 53  MYDSKAAERRADRHRQERIQRRVL 76


>SB_12499| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -2

Query: 333 AELGQFIDAFILYDGRVYIEANAVRCLNNSWTVCWGDITLID 208
           + +GQ++D  I+   R  I +   + L N W+VC  ++TL D
Sbjct: 288 SSMGQYVDKSIMDMERRLI-SREFKTLQNKWSVCLEEVTLED 328


>SB_51468| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1626

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 380 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTPGQSVGATS 219
           PP+   +S L     PQ   ++S+   C  V ST   +QS    T   SV  TS
Sbjct: 408 PPVWVPLSQLNYQIPPQGNTAASVAPGCKVVMSTLSSSQSQNPVTTSTSVATTS 461


>SB_32237| Best HMM Match : PGM_PMM_II (HMM E-Value=0.023)
          Length = 384

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 22/97 (22%), Positives = 42/97 (43%), Gaps = 4/97 (4%)
 Frame = -2

Query: 471 WKFLNEFSDLTDVRPDDVQSLLQGFLECHIAAHCFRRQSFNLVSFPAELGQFID--AFIL 298
           W F     D   + P ++ S+L+GF+      +   +   +  +  AE+  ++D     L
Sbjct: 173 WSFFCHKKDHPHLYPVNISSVLRGFM---YGTNVLDKDGISAAAVMAEMATYLDRQGLTL 229

Query: 297 YD--GRVYIEANAVRCLNNSWTVCWGDITLIDTSESV 193
            D   ++Y E   V   NNS+ +C    T++   E +
Sbjct: 230 TDQLAKLY-ERYGVHISNNSYYLCHSPPTIVKIFERI 265


>SB_23226| Best HMM Match : Herpes_UL43 (HMM E-Value=1.9)
          Length = 749

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 18/54 (33%), Positives = 24/54 (44%)
 Frame = -3

Query: 380 PPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTPGQSVGATS 219
           PP+   +S L     PQ   ++S+   C  V ST   +QS    T   SV  TS
Sbjct: 388 PPVWVPLSQLNYQIPPQGNTAASVAPGCKVVMSTLSSSQSQNPVTTSTSVATTS 441


>SB_38518| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1399

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 18/69 (26%), Positives = 34/69 (49%)
 Frame = -3

Query: 389 VILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTPGQSVGATSR*S 210
           V+ P  +  +S+++ SP    +  S   ++     S  K+T+    ++P  +V  T+   
Sbjct: 603 VVTPHTSGVMSVISGSPSDSTVTRSETVATTCPTNSAIKETKIGTYSSPKIAVNKTTAIF 662

Query: 209 TPVRASSTS 183
           TP  ASST+
Sbjct: 663 TP--ASSTN 669


>SB_55256| Best HMM Match : Lamp (HMM E-Value=0.55)
          Length = 284

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 15/44 (34%), Positives = 23/44 (52%)
 Frame = -3

Query: 374 IASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTP 243
           + S +S+ +S     ++ASS MPSS     +T   T +   TTP
Sbjct: 51  VPSTISMHSSPSISVSVASSVMPSSTSVAPTTPPATTTKAPTTP 94


>SB_29219| Best HMM Match : 7tm_1 (HMM E-Value=9.8e-06)
          Length = 863

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 24/75 (32%), Positives = 40/75 (53%)
 Frame = -3

Query: 386 ILPPIASAVSLLTSSPFPQNLASSSMPSSCMTVESTSKQTQSAV*TTPGQSVGATSR*ST 207
           + PP +S+    +SSP P + +SSS  SS  +  S+S  + S+       S  ++S  S+
Sbjct: 570 VSPPSSSS----SSSPPPASSSSSSSSSSSSSSSSSSSSSSSS------SSSSSSSSSSS 619

Query: 206 PVRASSTSRTAGCFS 162
              +SS+S + G FS
Sbjct: 620 SSSSSSSSASLGYFS 634


>SB_14893| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 735

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 23/78 (29%), Positives = 33/78 (42%)
 Frame = +1

Query: 112 NSFVTRRRSNRDGSLQFEKQPAVRDVEDALTGVDQRDVAPTDCPGVVQTADCVCFDVDST 291
           N +     S R G + +   P  R  E   TG   R  APT+CP  +QT   V  DV + 
Sbjct: 612 NGYGNLGNSGRRGCMPYPGIPVERLFELLKTGY--RMSAPTECPPEIQTMAFVHDDVVAM 669

Query: 292 VIQDEGIDELAKFCGKGD 345
            +  +      + CG+ D
Sbjct: 670 QLYVDVAMLERESCGQAD 687


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 25,687,419
Number of Sequences: 59808
Number of extensions: 511206
Number of successful extensions: 1637
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 1483
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1631
length of database: 16,821,457
effective HSP length: 82
effective length of database: 11,917,201
effective search space used: 2538363813
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)