Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= ps4M0250.Seq
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c...    26   3.2  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   4.2  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    25   5.6  
SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2 |Schizosac...    25   7.3  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   7.3  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   9.7  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    24   9.7  

>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 297

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = -2

Query: 309 ELYPDFGAVMHVLRKKPIDRSPRSKW 232
           EL PD+   M VL K+   R  RS+W
Sbjct: 186 ELLPDYSPDMSVLDKRSHPRPLRSEW 211


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +2

Query: 338 VDDFRSWRGVVLGRAASCCDLLRLS 412
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 24/84 (28%), Positives = 33/84 (39%)
 Frame = -2

Query: 435 NYESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKPI 256
           N  S  +  S   SQH   L    P  E+KS  D S PR +    P F +  ++ RK   
Sbjct: 131 NPSSSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRK----PSFFSKSNLKRKYRY 185

Query: 255 DRSPRSKWASTSRXAF*MRNATSK 184
            ++P   W       F  +N   K
Sbjct: 186 LKNP-DAWNLPPSLQFIPKNLNRK 208


>SPCC794.07 |||dihydrolipoamide S-acetyltransferase E2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 483

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = +3

Query: 294 SPDITQFDVGA-RNSL*TTSVPGGVLCSVEQRRAAI 398
           SP +T  ++GA +  +     PG VLC +E  +A I
Sbjct: 62  SPTMTTGNIGAFQKKIGDKIEPGDVLCEIETDKAQI 97


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 7.3
 Identities = 18/65 (27%), Positives = 30/65 (46%), Gaps = 2/65 (3%)
 Frame = -2

Query: 408 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDF--GAVMHVLRKKPIDRSPRSK 235
           S + SQHD A      + + KSST   +       Y +F  G  ++ L+    D  P +K
Sbjct: 126 SNSSSQHDKAFHERVDQGKNKSSTTKYQEFRTVADYREFSPGQSVNSLKPNSGDEVPSTK 185

Query: 234 WASTS 220
            +++S
Sbjct: 186 SSTSS 190


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 420 GAGLSLNRSQHDAALPSTTPRQERKSS 340
           G  LS+  S+ DAALP+  P  E + S
Sbjct: 427 GRPLSIADSECDAALPTVVPELEIEGS 453


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 24.2 bits (50), Expect = 9.7
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = -3

Query: 248 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDS 120
           L  P+G R  VS    + +++K+ C   P SRG TV    PD+
Sbjct: 6   LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPDN 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,725,154
Number of Sequences: 5004
Number of extensions: 30577
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)