Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= ps4M0250.Seq
(460 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_01_0315 - 2347254-2347345,2347485-2347895,2348182-2349633,234... 30 1.0
07_03_0846 - 21983581-21986055 29 1.4
01_06_0695 - 31292622-31293317 28 3.1
09_04_0235 + 15904891-15905218,15906732-15907594 28 4.2
08_02_1485 - 27466761-27467753 28 4.2
10_08_0113 - 14896341-14897153 27 7.3
08_01_0399 + 3524723-3525272,3525468-3525544,3526816-3526861,352... 27 7.3
01_06_0723 + 31501900-31502808,31502846-31503295 27 7.3
06_01_0655 + 4742267-4742531,4743313-4744136 27 9.6
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 27 9.6
>11_01_0315 -
2347254-2347345,2347485-2347895,2348182-2349633,
2349688-2350045,2350818-2351177,2351321-2351419,
2351856-2351948,2352078-2352215,2352389-2352476,
2352682-2352770,2353113-2353178,2353370-2353481,
2354702-2354901
Length = 1185
Score = 29.9 bits (64), Expect = 1.0
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = -2
Query: 387 DAALPSTTPRQERKSSTDYSEPRHRT--ELYPDFGAVMHVLRKKPIDRSPRSKW 232
D LP Q +K Y P+ R E G ++H ++P+D S SKW
Sbjct: 164 DVDLPECPRAQLKKQCIKYLGPQEREQYEYIITKGKIIHKYSEEPLDTSQGSKW 217
>07_03_0846 - 21983581-21986055
Length = 824
Score = 29.5 bits (63), Expect = 1.4
Identities = 19/50 (38%), Positives = 26/50 (52%)
Frame = -3
Query: 251 DLRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASA 102
DL+D G +R +C+T S PD S VS+ LPD+A+ A A
Sbjct: 326 DLQDFTGGCKRNVPLQCQTN--SSSAQTQPDKFYSMVSVRLPDNAQSAVA 373
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 3.1
Identities = 17/55 (30%), Positives = 20/55 (36%)
Frame = -2
Query: 423 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDFGAVMHVLRKKP 259
P L Q D PS++ SST S P HR L P V + P
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPRPVPRTIETTP 57
>09_04_0235 + 15904891-15905218,15906732-15907594
Length = 396
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/67 (22%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = -3
Query: 251 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLASALEAFRHNPA 75
++RDP+ G+R + + +++ E RG ++ PD +A L ++
Sbjct: 150 EIRDPSKGVRVWLGTYNTAEEAARAYDAEARKIRGKKAKVNFPDEPAVAQKLSLKQNAAK 209
Query: 74 DGXFAPP 54
APP
Sbjct: 210 QEKLAPP 216
>08_02_1485 - 27466761-27467753
Length = 330
Score = 27.9 bits (59), Expect = 4.2
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -3
Query: 167 PPDSRGSTVSISLPDSARLASALEAFRHNPADGXFAPPAAR 45
PP + G +S +P A LA++L + NPA PP ++
Sbjct: 39 PPSATGPVLSRDVPLDASLATSLRLYLPNPASPP-PPPTSK 78
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 7.3
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +1
Query: 307 LSSMSGLGIVCRRL----PFLAGCCAR 375
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>08_01_0399 +
3524723-3525272,3525468-3525544,3526816-3526861,
3527121-3527235,3528252-3528306,3528432-3528557
Length = 322
Score = 27.1 bits (57), Expect = 7.3
Identities = 21/73 (28%), Positives = 27/73 (36%), Gaps = 8/73 (10%)
Frame = -2
Query: 402 NRSQHDAALP----STTPRQERKSSTDYSEPRHRTELYP----DFGAVMHVLRKKPIDRS 247
++ QH AA P + P Y EP H + G VL K R+
Sbjct: 100 HQQQHAAAAPFVGAAPLPHHPSSGGACYCEPCHVAGAWRRGGCGGGGARGVLPAKRAPRA 159
Query: 246 PRSKWASTSRXAF 208
PR +W ST F
Sbjct: 160 PRMRWTSTLHARF 172
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 27.1 bits (57), Expect = 7.3
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 423 PGAGLSLNRSQHDAALPSTTPRQERKS-STDYSEP 322
PG L + DAA +TT +++R++ DYS P
Sbjct: 93 PGRALGFFHKEQDAAAVATTRKRKRRAIIVDYSTP 127
>06_01_0655 + 4742267-4742531,4743313-4744136
Length = 362
Score = 26.6 bits (56), Expect = 9.6
Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Frame = -3
Query: 251 DLRDPN-GLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPDSARLAS 105
++RDP G+R + F +++ E RG ++ PD A +AS
Sbjct: 129 EIRDPRKGVRVWLGTFNSPEEAARAYDAEARRIRGKKAKVNFPDGAPVAS 178
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 26.6 bits (56), Expect = 9.6
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 3/45 (6%)
Frame = -3
Query: 209 FECETRLVKSHCLE---PPDSRGSTVSISLPDSARLASALEAFRH 84
F + RL K HCLE P+S+ S+V +++ + A+ E H
Sbjct: 524 FMWDMRLSKKHCLELIGHPESQFSSVKLNIDNRTVFAATKEGTVH 568
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,283,399
Number of Sequences: 37544
Number of extensions: 235155
Number of successful extensions: 688
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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